{"event": "completion_received", "t_sec": 0.013, "step_index": 1, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. Defaults to the first 250 lines; page through longer files with offset/limit.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to read; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "offset": {"default": 1, "description": "1-based line number to start reading from.", "minimum": 1, "title": "Offset", "type": "integer"}, "limit": {"default": 250, "description": "Maximum number of lines to return.", "maximum": 2000, "minimum": 1, "title": "Limit", "type": "integer"}}, "required": ["path"], "title": "ReadArgs", "type": "object"}}}, {"type": "function", "function": {"name": "replace", "description": "Persist a code change to disk by replacing text in one file. `old_text` must match the file exactly (whitespace and indentation included) and occur exactly once; the call fails loudly when it is missing or ambiguous -- extend old_text with surrounding lines to disambiguate. To edit several places, return several replace calls.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to edit; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "old_text": {"description": "Exact existing text to replace, whitespace and indentation included; must occur exactly once in the file.", "minLength": 1, "title": "Old Text", "type": "string"}, "new_text": {"description": "Replacement text written in old_text's place.", "title": "New Text", "type": "string"}}, "required": ["path", "old_text", "new_text"], "title": "ReplaceArgs", "type": "object"}}}, {"type": "function", "function": {"name": "run", "description": "Run one shell command.", "parameters": {"additionalProperties": false, "properties": {"command": {"minLength": 1, "title": "Command", "type": "string"}, "cwd": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Cwd"}, "timeout_sec": {"default": 300, "description": "Seconds this command may run before it is terminated and its output so far is returned to you. Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\nI'll help you find those lost changes. Let me first explore the git repository to understand the current state.\n\n\n\n", "finish_reason": "tool_calls", "usage": {"prompt_tokens": 1463, "completion_tokens": 196, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "The user wants to find some changes they made to their personal site that got lost after checking out master. This sounds like a git situation where they were working on a branch or had uncommitted changes, then switched to master and lost track of their work.\n\nLet me first explore the repository and understand the git state to find those lost changes.\n", "response": {"id": "d8205b52e07442bd97437d529ebb6144", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "run", "args": {"command": "cd /app && git status"}}, {"call_index": 1, "name": "run", "args": {"command": "cd /app && git log --oneline -10"}}, {"call_index": 2, "name": "run", "args": {"command": "cd /app && git branch -a"}}]}, "llm_latency_sec": 0.0035}
{"event": "step_completed", "t_sec": 11.7474, "step_index": 1, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 128, "stdout": "", "stderr": "fatal: not a git repository (or any of the parent directories): .git\n"}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "step_completed", "t_sec": 11.7479, "step_index": 2, "call_index": 1, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 128, "stdout": "", "stderr": "fatal: not a git repository (or any of the parent directories): .git\n"}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "step_completed", "t_sec": 11.7481, "step_index": 3, "call_index": 2, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 128, "stdout": "", "stderr": "fatal: not a git repository (or any of the parent directories): .git\n"}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "completion_received", "t_sec": 11.758, "step_index": 4, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. Defaults to the first 250 lines; page through longer files with offset/limit.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to read; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "offset": {"default": 1, "description": "1-based line number to start reading from.", "minimum": 1, "title": "Offset", "type": "integer"}, "limit": {"default": 250, "description": "Maximum number of lines to return.", "maximum": 2000, "minimum": 1, "title": "Limit", "type": "integer"}}, "required": ["path"], "title": "ReadArgs", "type": "object"}}}, {"type": "function", "function": {"name": "replace", "description": "Persist a code change to disk by replacing text in one file. `old_text` must match the file exactly (whitespace and indentation included) and occur exactly once; the call fails loudly when it is missing or ambiguous -- extend old_text with surrounding lines to disambiguate. To edit several places, return several replace calls.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to edit; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "old_text": {"description": "Exact existing text to replace, whitespace and indentation included; must occur exactly once in the file.", "minLength": 1, "title": "Old Text", "type": "string"}, "new_text": {"description": "Replacement text written in old_text's place.", "title": "New Text", "type": "string"}}, "required": ["path", "old_text", "new_text"], "title": "ReplaceArgs", "type": "object"}}}, {"type": "function", "function": {"name": "run", "description": "Run one shell command.", "parameters": {"additionalProperties": false, "properties": {"command": {"minLength": 1, "title": "Command", "type": "string"}, "cwd": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Cwd"}, "timeout_sec": {"default": 300, "description": "Seconds this command may run before it is terminated and its output so far is returned to you. Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\n", "finish_reason": "tool_calls", "usage": {"prompt_tokens": 1735, "completion_tokens": 82, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "It seems /app is not a git repository yet. Let me look for any git repositories in the directory, or perhaps check if there's a git directory somewhere.\n", "response": {"id": "0e16cdbb9486470191d96e602c2e0f78", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "run", "args": {"command": "ls -la /app/", "timeout_sec": 300}}]}, "llm_latency_sec": 0.0015}
{"event": "step_completed", "t_sec": 12.0078, "step_index": 4, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 0, "stdout": "total 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh\n", "stderr": ""}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "completion_received", "t_sec": 12.0122, "step_index": 5, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. Defaults to the first 250 lines; page through longer files with offset/limit.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to read; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "offset": {"default": 1, "description": "1-based line number to start reading from.", "minimum": 1, "title": "Offset", "type": "integer"}, "limit": {"default": 250, "description": "Maximum number of lines to return.", "maximum": 2000, "minimum": 1, "title": "Limit", "type": "integer"}}, "required": ["path"], "title": "ReadArgs", "type": "object"}}}, {"type": "function", "function": {"name": "replace", "description": "Persist a code change to disk by replacing text in one file. `old_text` must match the file exactly (whitespace and indentation included) and occur exactly once; the call fails loudly when it is missing or ambiguous -- extend old_text with surrounding lines to disambiguate. To edit several places, return several replace calls.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to edit; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "old_text": {"description": "Exact existing text to replace, whitespace and indentation included; must occur exactly once in the file.", "minLength": 1, "title": "Old Text", "type": "string"}, "new_text": {"description": "Replacement text written in old_text's place.", "title": "New Text", "type": "string"}}, "required": ["path", "old_text", "new_text"], "title": "ReplaceArgs", "type": "object"}}}, {"type": "function", "function": {"name": "run", "description": "Run one shell command.", "parameters": {"additionalProperties": false, "properties": {"command": {"minLength": 1, "title": "Command", "type": "string"}, "cwd": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Cwd"}, "timeout_sec": {"default": 300, "description": "Seconds this command may run before it is terminated and its output so far is returned to you. Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\n", "finish_reason": "tool_calls", "usage": {"prompt_tokens": 1910, "completion_tokens": 71, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "It seems the repo might be inside the `personal-site` directory. Let me check there.\n", "response": {"id": "00562faea5b5414e9d9adb2b1926e289", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "run", "args": {"command": "ls -la /app/personal-site/", "timeout_sec": 300}}]}, "llm_latency_sec": 0.0007}
{"event": "step_completed", "t_sec": 12.2072, "step_index": 5, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 0, "stdout": "total 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources\n", "stderr": ""}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "completion_received", "t_sec": 12.2197, "step_index": 6, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0005", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/personal-site/\",\"timeout_sec\":300}"}}], "sha": "bb948e26e723"}, {"role": "tool", "tool_call_id": "call_0005", "content": "rc=0\nstdout:\ntotal 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources", "sha": "1b5ac2427213"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. 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Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. 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Let me check the git state there.\n", "response": {"id": "64df00a96b514e25b4b7928a7a8f63d5", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "run", "args": {"command": "cd /app/personal-site && git status", "timeout_sec": 300}}]}, "llm_latency_sec": 0.0011}
{"event": "step_completed", "t_sec": 12.6161, "step_index": 6, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 0, "stdout": "On branch master\nnothing to commit, working tree clean\n", "stderr": ""}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "completion_received", "t_sec": 12.6314, "step_index": 7, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0005", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/personal-site/\",\"timeout_sec\":300}"}}], "sha": "bb948e26e723"}, {"role": "tool", "tool_call_id": "call_0005", "content": "rc=0\nstdout:\ntotal 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources", "sha": "1b5ac2427213"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0006", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git status\",\"timeout_sec\":300}"}}], "sha": "15cbf94e37d4"}, {"role": "tool", "tool_call_id": "call_0006", "content": "rc=0\nstdout:\nOn branch master\nnothing to commit, working tree clean", "sha": "ea841e0be3be"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. 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{"event": "step_completed", "t_sec": 12.8492, "step_index": 7, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 0, "stdout": "d7d3e4b HEAD@{0}: checkout: moving from 650dba427e0a9dcd118f41a4c5e35c8017550a5a to master\n650dba4 HEAD@{1}: commit: Move to Stanford\nc4e38a1 HEAD@{2}: checkout: moving from master to HEAD~1\nd7d3e4b HEAD@{3}: reset: moving to d7d3e4b\nb0d59cd HEAD@{4}: clone: from https://github.com/TheMikeMerrill/personal-site.git\n", "stderr": ""}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "completion_received", "t_sec": 12.8634, "step_index": 8, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. 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Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0005", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/personal-site/\",\"timeout_sec\":300}"}}], "sha": "bb948e26e723"}, {"role": "tool", "tool_call_id": "call_0005", "content": "rc=0\nstdout:\ntotal 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources", "sha": "1b5ac2427213"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0006", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git status\",\"timeout_sec\":300}"}}], "sha": "15cbf94e37d4"}, {"role": "tool", "tool_call_id": "call_0006", "content": "rc=0\nstdout:\nOn branch master\nnothing to commit, working tree clean", "sha": "ea841e0be3be"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0007", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git reflog\",\"timeout_sec\":300}"}}], "sha": "7dda58606d7e"}, {"role": "tool", "tool_call_id": "call_0007", "content": "rc=0\nstdout:\nd7d3e4b HEAD@{0}: checkout: moving from 650dba427e0a9dcd118f41a4c5e35c8017550a5a to master\n650dba4 HEAD@{1}: commit: Move to Stanford\nc4e38a1 HEAD@{2}: checkout: moving from master to HEAD~1\nd7d3e4b HEAD@{3}: reset: moving to d7d3e4b\nb0d59cd HEAD@{4}: clone: from https://github.com/TheMikeMerrill/personal-site.git", "sha": "3e82d62aaa06"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. Defaults to the first 250 lines; page through longer files with offset/limit.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to read; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "offset": {"default": 1, "description": "1-based line number to start reading from.", "minimum": 1, "title": "Offset", "type": "integer"}, "limit": {"default": 250, "description": "Maximum number of lines to return.", "maximum": 2000, "minimum": 1, "title": "Limit", "type": "integer"}}, "required": ["path"], "title": "ReadArgs", "type": "object"}}}, {"type": "function", "function": {"name": "replace", "description": "Persist a code change to disk by replacing text in one file. `old_text` must match the file exactly (whitespace and indentation included) and occur exactly once; the call fails loudly when it is missing or ambiguous -- extend old_text with surrounding lines to disambiguate. To edit several places, return several replace calls.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to edit; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "old_text": {"description": "Exact existing text to replace, whitespace and indentation included; must occur exactly once in the file.", "minLength": 1, "title": "Old Text", "type": "string"}, "new_text": {"description": "Replacement text written in old_text's place.", "title": "New Text", "type": "string"}}, "required": ["path", "old_text", "new_text"], "title": "ReplaceArgs", "type": "object"}}}, {"type": "function", "function": {"name": "run", "description": "Run one shell command.", "parameters": {"additionalProperties": false, "properties": {"command": {"minLength": 1, "title": "Command", "type": "string"}, "cwd": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Cwd"}, "timeout_sec": {"default": 300, "description": "Seconds this command may run before it is terminated and its output so far is returned to you. Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\n", "finish_reason": "tool_calls", "usage": {"prompt_tokens": 2704, "completion_tokens": 379, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "I see the history now. Let me understand:\n\n1. The repo was cloned with commit `b0d59cd`\n2. There was a `reset` to `d7d3e4b` \n3. Then checkout to `HEAD~1` (which is `c4e38a1`)\n4. Then a commit \"Move to Stanford\" at `650dba4`\n5. Then checkout back to master (`d7d3e4b`)\n\nThe \"Move to Stanford\" commit `650dba4` seems to be the change the user made that they want to merge back into master. Let me look at this commit more closely.\n\nWait, let me think about this more carefully. The reflog shows:\n- `HEAD@{0}`: checkout from `650dba4` to master - so the user checked out master after making a commit on some branch\n- `HEAD@{1}`: commit \"Move to Stanford\" at `650dba4` - this is the commit they made\n- `HEAD@{2}`: checkout from master to `HEAD~1` \n- `HEAD@{3}`: reset to `d7d3e4b`\n- `HEAD@{4}`: clone\n\nIt seems like the commit `650dba4` (\"Move to Stanford\") was the change they made, and it's no longer on master. Let me verify by looking at what master points to now and what that commit contains.\n", "response": {"id": "ccbe1794c4954ead8868c3330a4b2d9e", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "run", "args": {"command": "cd /app/personal-site && git log --oneline master", "timeout_sec": 300}}]}, "llm_latency_sec": 0.0012}
{"event": "step_completed", "t_sec": 13.1108, "step_index": 8, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 0, "stdout": "d7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib\n2cd355a n+1 (for the last time???)\n8eaf505 Add BLADE\ncc2ec78 Underline\nd71094e Underline Conferences\n232b279 Remove posters\n3fdf5f5 Add NeurIPS\n8c4731d Add EMNLP acceptance\nf54f66b Add GR link\n18d2430 Add other links\n1dd055e Ignore Gemfile, etc\n5c77a6d Dont overwrite\nc7d2f95 Delete unsused files\n20b05d9 Remove more unused files\n2d144f7 Add yamls for new papers\n7882f2d Don't track _site\ncd2b8de Add new papers\n26dc65c Fix author\nbc1962c Interests update\n257eba8 More space for interests\nff6a94a Bib update\n97c4a55 Underline bold\na320806 Other fixes, new paper\n2cb7243 New PDFs\n7321328 PDF update\nf1e3860 Deletions\n7b4d171 Update Bio\n073117a Another update\ncb63517 Another CV Updatee\n192ae7b update headshot\n7fb9365 Update about and contact\n54ef19d CV Update\nb0fb76a Add GR\n6adfab9 n plus one\n8a5509d Needs to be a string\ne2f686e Add Gemfile\nfa098ef properly handle class\na8fffe9 Add cv\n01d029a Add biblib/__pycache__/ to .gitignore\na06e285 Update file paths for personal site and add new PhD experience\ncef1969 ingore\n76398c6 CV Update\n7fe50ca Include asterix\na8ff8fb fix venue name\nc0e24b9 Adds Neurips Paper\n8379341 CV Update\nc2ca090 Typos\n115a23a Re order interests\nb2f98e3 Annual update of interests\n3b6f690 Make thumbnails larger\n177c92f Add note field\n2a49416 Annual update to bio\ne3abd37 Add epj paper\n5ddf58a New papers capitalized\n5b770eb New papers\n199bc67 CV Update\n79d1ef2 Removed consultling line\nb00b8a4 Format\n4ebe937 Consulting\n93cd578 CV, about, and interests update\n218ead3 Third year now!\n8aac2ab snark removed\na404b45 Added new paper\n43117c7 Forgot thumbnail and pdf\n36a7b51 New paper!\nef5ebab Added old research statement for UW\nfbe500f Added old research statement\n883942a Fall 2020 Changes\n6336a21 Added work statement\nec13894 Fixed column layout\n45ad2b8 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\ndd1ae17 Empty commit\n8c236a4 Merge pull request #2 from TheMikeMerrill/jekyll\n018fcf4 Migrated to Jekyll\ndfa4420 Reverted Name (doesn't fit, maybe fix later if bored)\nc61b406 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\nb3ae4f0 Changed name (for real!)\n09cafdd Changed name (for real!)\n719ac48 Added Tim\nedbd5ac Changed name\ndfbe936 Updated CV\nbdbb55c Changed interests\nc13876c Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\n35707d9 Added .nojekyl\n3972ef7 Merge pull request #1 from TheMikeMerrill/deployment\n4798881 Fixed HR Link\nb4ee987 Create CNAME\na1f4a2d Updated Resume\nb2d01e3 Add files via upload\n5f9aeab Add files via upload\na1d746d Delete README.md\n02ed510 Initial commit\n", "stderr": ""}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "completion_received", "t_sec": 13.1333, "step_index": 9, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0005", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/personal-site/\",\"timeout_sec\":300}"}}], "sha": "bb948e26e723"}, {"role": "tool", "tool_call_id": "call_0005", "content": "rc=0\nstdout:\ntotal 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources", "sha": "1b5ac2427213"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0006", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git status\",\"timeout_sec\":300}"}}], "sha": "15cbf94e37d4"}, {"role": "tool", "tool_call_id": "call_0006", "content": "rc=0\nstdout:\nOn branch master\nnothing to commit, working tree clean", "sha": "ea841e0be3be"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0007", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git reflog\",\"timeout_sec\":300}"}}], "sha": "7dda58606d7e"}, {"role": "tool", "tool_call_id": "call_0007", "content": "rc=0\nstdout:\nd7d3e4b HEAD@{0}: checkout: moving from 650dba427e0a9dcd118f41a4c5e35c8017550a5a to master\n650dba4 HEAD@{1}: commit: Move to Stanford\nc4e38a1 HEAD@{2}: checkout: moving from master to HEAD~1\nd7d3e4b HEAD@{3}: reset: moving to d7d3e4b\nb0d59cd HEAD@{4}: clone: from https://github.com/TheMikeMerrill/personal-site.git", "sha": "3e82d62aaa06"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0008", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git log --oneline master\",\"timeout_sec\":300}"}}], "sha": "01775442ffe4"}, {"role": "tool", "tool_call_id": "call_0008", "content": "rc=0\nstdout:\nd7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib\n2cd355a n+1 (for the last time???)\n8eaf505 Add BLADE\ncc2ec78 Underline\nd71094e Underline Conferences\n232b279 Remove posters\n3fdf5f5 Add NeurIPS\n8c4731d Add EMNLP acceptance\nf54f66b Add GR link\n18d2430 Add other links\n1dd055e Ignore Gemfile, etc\n5c77a6d Dont overwrite\nc7d2f95 Delete unsused files\n20b05d9 Remove more unused files\n2d144f7 Add yamls for new papers\n7882f2d Don't track _site\ncd2b8de Add new papers\n26dc65c Fix author\nbc1962c Interests update\n257eba8 More space for interests\nff6a94a Bib update\n97c4a55 Underline bold\na320806 Other fixes, new paper\n2cb7243 New PDFs\n7321328 PDF update\nf1e3860 Deletions\n7b4d171 Update Bio\n073117a Another update\ncb63517 Another CV Updatee\n192ae7b update headshot\n7fb9365 Update about and contact\n54ef19d CV Update\nb0fb76a Add GR\n6adfab9 n plus one\n8a5509d Needs to be a string\ne2f686e Add Gemfile\nfa098ef properly handle class\na8fffe9 Add cv\n01d029a Add biblib/__pycache__/ to .gitignore\na06e285 Update file paths for personal site and add new PhD experience\ncef1969 ingore\n76398c6 CV Update\n7fe50ca Include asterix\na8ff8fb fix venue name\nc0e24b9 Adds Neurips Paper\n8379341 CV Update\nc2ca090 Typos\n115a23a Re order interests\nb2f98e3 Annual update of interests\n3b6f690 Make thumbnails larger\n177c92f Add note field\n2a49416 Annual update to bio\ne3abd37 Add epj paper\n5ddf58a New papers capitalized\n5b770eb New papers\n199bc67 CV 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Added .nojekyl\n3972ef7 Merge pull request #1 from TheMikeMerrill/deployment\n4798881 Fixed HR Link\nb4ee987 Create CNAME\na1f4a2d Updated Resume\nb2d01e3 Add files via upload\n5f9aeab Add files via upload\na1d746d Delete README.md\n02ed510 Initial commit", "sha": "2ac0cf8ee282"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. Defaults to the first 250 lines; page through longer files with offset/limit.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to read; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "offset": {"default": 1, "description": "1-based line number to start reading from.", "minimum": 1, "title": "Offset", "type": "integer"}, "limit": {"default": 250, "description": "Maximum number of lines to return.", "maximum": 2000, "minimum": 1, "title": "Limit", "type": "integer"}}, "required": ["path"], "title": "ReadArgs", "type": "object"}}}, {"type": "function", "function": {"name": "replace", "description": "Persist a code change to disk by replacing text in one file. `old_text` must match the file exactly (whitespace and indentation included) and occur exactly once; the call fails loudly when it is missing or ambiguous -- extend old_text with surrounding lines to disambiguate. To edit several places, return several replace calls.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to edit; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "old_text": {"description": "Exact existing text to replace, whitespace and indentation included; must occur exactly once in the file.", "minLength": 1, "title": "Old Text", "type": "string"}, "new_text": {"description": "Replacement text written in old_text's place.", "title": "New Text", "type": "string"}}, "required": ["path", "old_text", "new_text"], "title": "ReplaceArgs", "type": "object"}}}, {"type": "function", "function": {"name": "run", "description": "Run one shell command.", "parameters": {"additionalProperties": false, "properties": {"command": {"minLength": 1, "title": "Command", "type": "string"}, "cwd": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Cwd"}, "timeout_sec": {"default": 300, "description": "Seconds this command may run before it is terminated and its output so far is returned to you. Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\nI can see the issue. You checked out commit `650dba4` (\"Move to Stanford\") and then checked out master. That commit is not on the master branch. Let me examine it and merge it.\n\n", "finish_reason": "tool_calls", "usage": {"prompt_tokens": 3872, "completion_tokens": 173, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "I can see from the reflog that the user checked out a commit `650dba4` (commit message \"Move to Stanford\") and then checked out master. The commit `650dba4` is not in the master branch history. Let me look at what changes were in that commit and merge them into master.\n", "response": {"id": "9e19cd6d873a4f34838143d7f2b57a67", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "run", "args": {"command": "cd /app/personal-site && git diff master 650dba4", "timeout_sec": 300}}]}, "llm_latency_sec": 0.0025}
{"event": "step_completed", "t_sec": 13.3642, "step_index": 9, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 0, "stdout": "diff --git a/_includes/about.md b/_includes/about.md\nindex ebf11b4..7561d9e 100644\n--- a/_includes/about.md\n+++ b/_includes/about.md\n@@ -1,3 +1,3 @@\n-I am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n+I am a Postdoctoral Researcher at Stanford CS.\n \n- Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\n+Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\ndiff --git a/_layouts/default.html b/_layouts/default.html\nindex 3fe07ee..cff5b5e 100644\n--- a/_layouts/default.html\n+++ b/_layouts/default.html\n@@ -27,7 +27,9 @@\n     <link href=\"css/bootstrap.min.css\" rel=\"stylesheet\">\n     <link href=\"css/style.css\" rel=\"stylesheet\">\n \n-    <link href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\" rel=\"stylesheet\">\n+    <link\n+        href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\"\n+        rel=\"stylesheet\">\n \n </head>\n \n@@ -38,7 +40,7 @@\n             <div class=\"jumbotron\">\n                 <div class=\"row\">\n                     <h3>\n-                        PhD Student @ UW CSE\n+                        Postdoc @ Stanford\n                     </h3>\n                 </div>\n                 <div class=\"row\">\n@@ -88,7 +90,7 @@\n         <div class=\"row\">\n             <div class=\"col-md-12\">\n                 <h2>Publications</h2>\n-                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %} \n+                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %}\n                 {% for pub in sorted_pubs %}\n                 <div class=\"row\">\n                     <div class=\"col-md-3 hide-on-small\">\n@@ -99,22 +101,22 @@\n                     <div class=\"col-md-9\">\n                         <p><b>{{pub.title}}</b></p>\n                         <p>\n-                            {% if pub.author contains \"Michael Merrill\" %} \n-                                {% assign a = pub.author | split: 'Michael Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill*\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}} \n+                            {% if pub.author contains \"Michael Merrill\" %}\n+                            {% assign a = pub.author | split: 'Michael Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill*\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}}\n \n                             {% endif %}\n                         </p>\n-                        <p><span class = \"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n+                        <p><span class=\"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n                             <a href=\"{{pub.pdf_path}}\">[PDF]</a> {% endif %}\n                             {% for link in pub.other_links %}\n-                            <a href=\"{{link.url}}\">[{{link.name}}]</a> \n+                            <a href=\"{{link.url}}\">[{{link.name}}]</a>\n                             {% endfor %}\n                             {{pub.notes}}\n                         </p>\n@@ -123,7 +125,7 @@\n                 </div>\n                 {% endfor %}\n             </div>\n-            \n+\n         </div>\n \n     </div>\n", "stderr": ""}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "completion_received", "t_sec": 13.3888, "step_index": 10, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0005", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/personal-site/\",\"timeout_sec\":300}"}}], "sha": "bb948e26e723"}, {"role": "tool", "tool_call_id": "call_0005", "content": "rc=0\nstdout:\ntotal 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources", "sha": "1b5ac2427213"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0006", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git status\",\"timeout_sec\":300}"}}], "sha": "15cbf94e37d4"}, {"role": "tool", "tool_call_id": "call_0006", "content": "rc=0\nstdout:\nOn branch master\nnothing to commit, working tree clean", "sha": "ea841e0be3be"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0007", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git reflog\",\"timeout_sec\":300}"}}], "sha": "7dda58606d7e"}, {"role": "tool", "tool_call_id": "call_0007", "content": "rc=0\nstdout:\nd7d3e4b HEAD@{0}: checkout: moving from 650dba427e0a9dcd118f41a4c5e35c8017550a5a to master\n650dba4 HEAD@{1}: commit: Move to Stanford\nc4e38a1 HEAD@{2}: checkout: moving from master to HEAD~1\nd7d3e4b HEAD@{3}: reset: moving to d7d3e4b\nb0d59cd HEAD@{4}: clone: from https://github.com/TheMikeMerrill/personal-site.git", "sha": "3e82d62aaa06"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0008", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git log --oneline master\",\"timeout_sec\":300}"}}], "sha": "01775442ffe4"}, {"role": "tool", "tool_call_id": "call_0008", "content": "rc=0\nstdout:\nd7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib\n2cd355a n+1 (for the last time???)\n8eaf505 Add BLADE\ncc2ec78 Underline\nd71094e Underline Conferences\n232b279 Remove posters\n3fdf5f5 Add NeurIPS\n8c4731d Add EMNLP acceptance\nf54f66b Add GR link\n18d2430 Add other links\n1dd055e Ignore Gemfile, etc\n5c77a6d Dont overwrite\nc7d2f95 Delete unsused files\n20b05d9 Remove more unused files\n2d144f7 Add yamls for new papers\n7882f2d Don't track _site\ncd2b8de Add new papers\n26dc65c Fix author\nbc1962c Interests update\n257eba8 More space for interests\nff6a94a Bib update\n97c4a55 Underline bold\na320806 Other fixes, new paper\n2cb7243 New PDFs\n7321328 PDF update\nf1e3860 Deletions\n7b4d171 Update Bio\n073117a Another update\ncb63517 Another CV Updatee\n192ae7b update headshot\n7fb9365 Update about and contact\n54ef19d CV Update\nb0fb76a Add GR\n6adfab9 n plus one\n8a5509d Needs to be a string\ne2f686e Add Gemfile\nfa098ef properly handle class\na8fffe9 Add cv\n01d029a Add biblib/__pycache__/ to .gitignore\na06e285 Update file paths for personal site and add new PhD experience\ncef1969 ingore\n76398c6 CV Update\n7fe50ca Include asterix\na8ff8fb fix venue name\nc0e24b9 Adds Neurips Paper\n8379341 CV Update\nc2ca090 Typos\n115a23a Re order interests\nb2f98e3 Annual update of interests\n3b6f690 Make thumbnails larger\n177c92f Add note field\n2a49416 Annual update to bio\ne3abd37 Add epj paper\n5ddf58a New papers capitalized\n5b770eb New papers\n199bc67 CV Update\n79d1ef2 Removed consultling line\nb00b8a4 Format\n4ebe937 Consulting\n93cd578 CV, about, and interests update\n218ead3 Third year now!\n8aac2ab snark removed\na404b45 Added new paper\n43117c7 Forgot thumbnail and pdf\n36a7b51 New paper!\nef5ebab Added old research statement for UW\nfbe500f Added old research statement\n883942a Fall 2020 Changes\n6336a21 Added work statement\nec13894 Fixed column layout\n45ad2b8 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\ndd1ae17 Empty commit\n8c236a4 Merge pull request #2 from TheMikeMerrill/jekyll\n018fcf4 Migrated to Jekyll\ndfa4420 Reverted Name (doesn't fit, maybe fix later if bored)\nc61b406 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\nb3ae4f0 Changed name (for real!)\n09cafdd Changed name (for real!)\n719ac48 Added Tim\nedbd5ac Changed name\ndfbe936 Updated CV\nbdbb55c Changed interests\nc13876c Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\n35707d9 Added .nojekyl\n3972ef7 Merge pull request #1 from TheMikeMerrill/deployment\n4798881 Fixed HR Link\nb4ee987 Create CNAME\na1f4a2d Updated Resume\nb2d01e3 Add files via upload\n5f9aeab Add files via upload\na1d746d Delete README.md\n02ed510 Initial commit", "sha": "2ac0cf8ee282"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0009", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git diff master 650dba4\",\"timeout_sec\":300}"}}], "sha": "82c15b4ec0c0"}, {"role": "tool", "tool_call_id": "call_0009", "content": "rc=0\nstdout:\ndiff --git a/_includes/about.md b/_includes/about.md\nindex ebf11b4..7561d9e 100644\n--- a/_includes/about.md\n+++ b/_includes/about.md\n@@ -1,3 +1,3 @@\n-I am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n+I am a Postdoctoral Researcher at Stanford CS.\n \n- Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\n+Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\ndiff --git a/_layouts/default.html b/_layouts/default.html\nindex 3fe07ee..cff5b5e 100644\n--- a/_layouts/default.html\n+++ b/_layouts/default.html\n@@ -27,7 +27,9 @@\n     <link href=\"css/bootstrap.min.css\" rel=\"stylesheet\">\n     <link href=\"css/style.css\" rel=\"stylesheet\">\n \n-    <link href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\" rel=\"stylesheet\">\n+    <link\n+        href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\"\n+        rel=\"stylesheet\">\n \n </head>\n \n@@ -38,7 +40,7 @@\n             <div class=\"jumbotron\">\n                 <div class=\"row\">\n                     <h3>\n-                        PhD Student @ UW CSE\n+                        Postdoc @ Stanford\n                     </h3>\n                 </div>\n                 <div class=\"row\">\n@@ -88,7 +90,7 @@\n         <div class=\"row\">\n             <div class=\"col-md-12\">\n                 <h2>Publications</h2>\n-                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %} \n+                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %}\n                 {% for pub in sorted_pubs %}\n                 <div class=\"row\">\n                     <div class=\"col-md-3 hide-on-small\">\n@@ -99,22 +101,22 @@\n                     <div class=\"col-md-9\">\n                         <p><b>{{pub.title}}</b></p>\n                         <p>\n-                            {% if pub.author contains \"Michael Merrill\" %} \n-                                {% assign a = pub.author | split: 'Michael Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill*\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}} \n+                            {% if pub.author contains \"Michael Merrill\" %}\n+                            {% assign a = pub.author | split: 'Michael Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill*\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}}\n \n                             {% endif %}\n                         </p>\n-                        <p><span class = \"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n+                        <p><span class=\"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n                             <a href=\"{{pub.pdf_path}}\">[PDF]</a> {% endif %}\n                             {% for link in pub.other_links %}\n-                            <a href=\"{{link.url}}\">[{{link.name}}]</a> \n+                            <a href=\"{{link.url}}\">[{{link.name}}]</a>\n                             {% endfor %}\n                             {{pub.notes}}\n                         </p>\n@@ -123,7 +125,7 @@\n                 </div>\n                 {% endfor %}\n             </div>\n-            \n+\n         </div>\n \n     </div>", "sha": "0e17bac08657"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. Defaults to the first 250 lines; page through longer files with offset/limit.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to read; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "offset": {"default": 1, "description": "1-based line number to start reading from.", "minimum": 1, "title": "Offset", "type": "integer"}, "limit": {"default": 250, "description": "Maximum number of lines to return.", "maximum": 2000, "minimum": 1, "title": "Limit", "type": "integer"}}, "required": ["path"], "title": "ReadArgs", "type": "object"}}}, {"type": "function", "function": {"name": "replace", "description": "Persist a code change to disk by replacing text in one file. `old_text` must match the file exactly (whitespace and indentation included) and occur exactly once; the call fails loudly when it is missing or ambiguous -- extend old_text with surrounding lines to disambiguate. To edit several places, return several replace calls.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to edit; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "old_text": {"description": "Exact existing text to replace, whitespace and indentation included; must occur exactly once in the file.", "minLength": 1, "title": "Old Text", "type": "string"}, "new_text": {"description": "Replacement text written in old_text's place.", "title": "New Text", "type": "string"}}, "required": ["path", "old_text", "new_text"], "title": "ReplaceArgs", "type": "object"}}}, {"type": "function", "function": {"name": "run", "description": "Run one shell command.", "parameters": {"additionalProperties": false, "properties": {"command": {"minLength": 1, "title": "Command", "type": "string"}, "cwd": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Cwd"}, "timeout_sec": {"default": 300, "description": "Seconds this command may run before it is terminated and its output so far is returned to you. Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\nI found the lost changes. The reflog shows a commit `650dba4` titled \"Move to Stanford\" that contains the changes made to the `about.md` and `default.html` files. Let me merge that commit into master.\n\n", "finish_reason": "tool_calls", "usage": {"prompt_tokens": 5262, "completion_tokens": 208, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "The commit `650dba4` on the reflog shows \"Move to Stanford\" which is the commit the user was working on. They checked out a commit (HEAD~1) and then checked out back to master, and their changes were lost. The changes are in commit `650dba4`. I need to merge this commit into master.\n\nLet me use `git cherry-pick` or `git merge` to apply those changes to master.\n", "response": {"id": "013c810b92b2402b814f8b66b0c71ef5", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "run", "args": {"command": "cd /app/personal-site && git cherry-pick 650dba4", "timeout_sec": 300}}]}, "llm_latency_sec": 0.0017}
{"event": "step_completed", "t_sec": 13.6274, "step_index": 10, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 1, "stdout": "Auto-merging _includes/about.md\nCONFLICT (content): Merge conflict in _includes/about.md\n", "stderr": "error: could not apply 650dba4... Move to Stanford\nhint: After resolving the conflicts, mark them with\nhint: \"git add/rm <pathspec>\", then run\nhint: \"git cherry-pick --continue\".\nhint: You can instead skip this commit with \"git cherry-pick --skip\".\nhint: To abort and get back to the state before \"git cherry-pick\",\nhint: run \"git cherry-pick --abort\".\n"}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "completion_received", "t_sec": 13.6393, "step_index": 11, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0005", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/personal-site/\",\"timeout_sec\":300}"}}], "sha": "bb948e26e723"}, {"role": "tool", "tool_call_id": "call_0005", "content": "rc=0\nstdout:\ntotal 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources", "sha": "1b5ac2427213"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0006", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git status\",\"timeout_sec\":300}"}}], "sha": "15cbf94e37d4"}, {"role": "tool", "tool_call_id": "call_0006", "content": "rc=0\nstdout:\nOn branch master\nnothing to commit, working tree clean", "sha": "ea841e0be3be"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0007", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git reflog\",\"timeout_sec\":300}"}}], "sha": "7dda58606d7e"}, {"role": "tool", "tool_call_id": "call_0007", "content": "rc=0\nstdout:\nd7d3e4b HEAD@{0}: checkout: moving from 650dba427e0a9dcd118f41a4c5e35c8017550a5a to master\n650dba4 HEAD@{1}: commit: Move to Stanford\nc4e38a1 HEAD@{2}: checkout: moving from master to HEAD~1\nd7d3e4b HEAD@{3}: reset: moving to d7d3e4b\nb0d59cd HEAD@{4}: clone: from https://github.com/TheMikeMerrill/personal-site.git", "sha": "3e82d62aaa06"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0008", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git log --oneline master\",\"timeout_sec\":300}"}}], "sha": "01775442ffe4"}, {"role": "tool", "tool_call_id": "call_0008", "content": "rc=0\nstdout:\nd7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib\n2cd355a n+1 (for the last time???)\n8eaf505 Add BLADE\ncc2ec78 Underline\nd71094e Underline Conferences\n232b279 Remove posters\n3fdf5f5 Add NeurIPS\n8c4731d Add EMNLP acceptance\nf54f66b Add GR link\n18d2430 Add other links\n1dd055e Ignore Gemfile, etc\n5c77a6d Dont overwrite\nc7d2f95 Delete unsused files\n20b05d9 Remove more unused files\n2d144f7 Add yamls for new papers\n7882f2d Don't track _site\ncd2b8de Add new papers\n26dc65c Fix author\nbc1962c Interests update\n257eba8 More space for interests\nff6a94a Bib update\n97c4a55 Underline bold\na320806 Other fixes, new paper\n2cb7243 New PDFs\n7321328 PDF update\nf1e3860 Deletions\n7b4d171 Update Bio\n073117a Another update\ncb63517 Another CV Updatee\n192ae7b update headshot\n7fb9365 Update about and contact\n54ef19d CV Update\nb0fb76a Add GR\n6adfab9 n plus one\n8a5509d Needs to be a string\ne2f686e Add Gemfile\nfa098ef properly handle class\na8fffe9 Add cv\n01d029a Add biblib/__pycache__/ to .gitignore\na06e285 Update file paths for personal site and add new PhD experience\ncef1969 ingore\n76398c6 CV Update\n7fe50ca Include asterix\na8ff8fb fix venue name\nc0e24b9 Adds Neurips Paper\n8379341 CV Update\nc2ca090 Typos\n115a23a Re order interests\nb2f98e3 Annual update of interests\n3b6f690 Make thumbnails larger\n177c92f Add note field\n2a49416 Annual update to bio\ne3abd37 Add epj paper\n5ddf58a New papers capitalized\n5b770eb New papers\n199bc67 CV Update\n79d1ef2 Removed consultling line\nb00b8a4 Format\n4ebe937 Consulting\n93cd578 CV, about, and interests update\n218ead3 Third year now!\n8aac2ab snark removed\na404b45 Added new paper\n43117c7 Forgot thumbnail and pdf\n36a7b51 New paper!\nef5ebab Added old research statement for UW\nfbe500f Added old research statement\n883942a Fall 2020 Changes\n6336a21 Added work statement\nec13894 Fixed column layout\n45ad2b8 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\ndd1ae17 Empty commit\n8c236a4 Merge pull request #2 from TheMikeMerrill/jekyll\n018fcf4 Migrated to Jekyll\ndfa4420 Reverted Name (doesn't fit, maybe fix later if bored)\nc61b406 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\nb3ae4f0 Changed name (for real!)\n09cafdd Changed name (for real!)\n719ac48 Added Tim\nedbd5ac Changed name\ndfbe936 Updated CV\nbdbb55c Changed interests\nc13876c Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\n35707d9 Added .nojekyl\n3972ef7 Merge pull request #1 from TheMikeMerrill/deployment\n4798881 Fixed HR Link\nb4ee987 Create CNAME\na1f4a2d Updated Resume\nb2d01e3 Add files via upload\n5f9aeab Add files via upload\na1d746d Delete README.md\n02ed510 Initial commit", "sha": "2ac0cf8ee282"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0009", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git diff master 650dba4\",\"timeout_sec\":300}"}}], "sha": "82c15b4ec0c0"}, {"role": "tool", "tool_call_id": "call_0009", "content": "rc=0\nstdout:\ndiff --git a/_includes/about.md b/_includes/about.md\nindex ebf11b4..7561d9e 100644\n--- a/_includes/about.md\n+++ b/_includes/about.md\n@@ -1,3 +1,3 @@\n-I am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n+I am a Postdoctoral Researcher at Stanford CS.\n \n- Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\n+Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\ndiff --git a/_layouts/default.html b/_layouts/default.html\nindex 3fe07ee..cff5b5e 100644\n--- a/_layouts/default.html\n+++ b/_layouts/default.html\n@@ -27,7 +27,9 @@\n     <link href=\"css/bootstrap.min.css\" rel=\"stylesheet\">\n     <link href=\"css/style.css\" rel=\"stylesheet\">\n \n-    <link href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\" rel=\"stylesheet\">\n+    <link\n+        href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\"\n+        rel=\"stylesheet\">\n \n </head>\n \n@@ -38,7 +40,7 @@\n             <div class=\"jumbotron\">\n                 <div class=\"row\">\n                     <h3>\n-                        PhD Student @ UW CSE\n+                        Postdoc @ Stanford\n                     </h3>\n                 </div>\n                 <div class=\"row\">\n@@ -88,7 +90,7 @@\n         <div class=\"row\">\n             <div class=\"col-md-12\">\n                 <h2>Publications</h2>\n-                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %} \n+                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %}\n                 {% for pub in sorted_pubs %}\n                 <div class=\"row\">\n                     <div class=\"col-md-3 hide-on-small\">\n@@ -99,22 +101,22 @@\n                     <div class=\"col-md-9\">\n                         <p><b>{{pub.title}}</b></p>\n                         <p>\n-                            {% if pub.author contains \"Michael Merrill\" %} \n-                                {% assign a = pub.author | split: 'Michael Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill*\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}} \n+                            {% if pub.author contains \"Michael Merrill\" %}\n+                            {% assign a = pub.author | split: 'Michael Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill*\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}}\n \n                             {% endif %}\n                         </p>\n-                        <p><span class = \"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n+                        <p><span class=\"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n                             <a href=\"{{pub.pdf_path}}\">[PDF]</a> {% endif %}\n                             {% for link in pub.other_links %}\n-                            <a href=\"{{link.url}}\">[{{link.name}}]</a> \n+                            <a href=\"{{link.url}}\">[{{link.name}}]</a>\n                             {% endfor %}\n                             {{pub.notes}}\n                         </p>\n@@ -123,7 +125,7 @@\n                 </div>\n                 {% endfor %}\n             </div>\n-            \n+\n         </div>\n \n     </div>", "sha": "0e17bac08657"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0010", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git cherry-pick 650dba4\",\"timeout_sec\":300}"}}], "sha": "e57d81efb82b"}, {"role": "tool", "tool_call_id": "call_0010", "content": "rc=1\nstdout:\nAuto-merging _includes/about.md\nCONFLICT (content): Merge conflict in _includes/about.md\nstderr:\nerror: could not apply 650dba4... Move to Stanford\nhint: After resolving the conflicts, mark them with\nhint: \"git add/rm <pathspec>\", then run\nhint: \"git cherry-pick --continue\".\nhint: You can instead skip this commit with \"git cherry-pick --skip\".\nhint: To abort and get back to the state before \"git cherry-pick\",\nhint: run \"git cherry-pick --abort\".", "sha": "b462e8c82a68"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. Defaults to the first 250 lines; page through longer files with offset/limit.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to read; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "offset": {"default": 1, "description": "1-based line number to start reading from.", "minimum": 1, "title": "Offset", "type": "integer"}, "limit": {"default": 250, "description": "Maximum number of lines to return.", "maximum": 2000, "minimum": 1, "title": "Limit", "type": "integer"}}, "required": ["path"], "title": "ReadArgs", "type": "object"}}}, {"type": "function", "function": {"name": "replace", "description": "Persist a code change to disk by replacing text in one file. `old_text` must match the file exactly (whitespace and indentation included) and occur exactly once; the call fails loudly when it is missing or ambiguous -- extend old_text with surrounding lines to disambiguate. To edit several places, return several replace calls.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to edit; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "old_text": {"description": "Exact existing text to replace, whitespace and indentation included; must occur exactly once in the file.", "minLength": 1, "title": "Old Text", "type": "string"}, "new_text": {"description": "Replacement text written in old_text's place.", "title": "New Text", "type": "string"}}, "required": ["path", "old_text", "new_text"], "title": "ReplaceArgs", "type": "object"}}}, {"type": "function", "function": {"name": "run", "description": "Run one shell command.", "parameters": {"additionalProperties": false, "properties": {"command": {"minLength": 1, "title": "Command", "type": "string"}, "cwd": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Cwd"}, "timeout_sec": {"default": 300, "description": "Seconds this command may run before it is terminated and its output so far is returned to you. Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\n", "finish_reason": "tool_calls", "usage": {"prompt_tokens": 5467, "completion_tokens": 81, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "The cherry-pick has a conflict in `_includes/about.md`. Let me check what the current state is and resolve the conflict.\n", "response": {"id": "97276077264e4b158db412c17ff196f3", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "run", "args": {"command": "cd /app/personal-site && cat _includes/about.md", "timeout_sec": 300}}]}, "llm_latency_sec": 0.0009}
{"event": "step_completed", "t_sec": 13.8531, "step_index": 11, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 0, "stdout": "<<<<<<< HEAD\nI am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n\n Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n=======\nI am a Postdoctoral Researcher at Stanford CS.\n\nPreviously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n>>>>>>> 650dba4 (Move to Stanford)\n", "stderr": ""}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "completion_received", "t_sec": 13.8665, "step_index": 12, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0005", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/personal-site/\",\"timeout_sec\":300}"}}], "sha": "bb948e26e723"}, {"role": "tool", "tool_call_id": "call_0005", "content": "rc=0\nstdout:\ntotal 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources", "sha": "1b5ac2427213"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0006", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git status\",\"timeout_sec\":300}"}}], "sha": "15cbf94e37d4"}, {"role": "tool", "tool_call_id": "call_0006", "content": "rc=0\nstdout:\nOn branch master\nnothing to commit, working tree clean", "sha": "ea841e0be3be"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0007", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git reflog\",\"timeout_sec\":300}"}}], "sha": "7dda58606d7e"}, {"role": "tool", "tool_call_id": "call_0007", "content": "rc=0\nstdout:\nd7d3e4b HEAD@{0}: checkout: moving from 650dba427e0a9dcd118f41a4c5e35c8017550a5a to master\n650dba4 HEAD@{1}: commit: Move to Stanford\nc4e38a1 HEAD@{2}: checkout: moving from master to HEAD~1\nd7d3e4b HEAD@{3}: reset: moving to d7d3e4b\nb0d59cd HEAD@{4}: clone: from https://github.com/TheMikeMerrill/personal-site.git", "sha": "3e82d62aaa06"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0008", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git log --oneline master\",\"timeout_sec\":300}"}}], "sha": "01775442ffe4"}, {"role": "tool", "tool_call_id": "call_0008", "content": "rc=0\nstdout:\nd7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib\n2cd355a n+1 (for the last time???)\n8eaf505 Add BLADE\ncc2ec78 Underline\nd71094e Underline Conferences\n232b279 Remove posters\n3fdf5f5 Add NeurIPS\n8c4731d Add EMNLP acceptance\nf54f66b Add GR link\n18d2430 Add other links\n1dd055e Ignore Gemfile, etc\n5c77a6d Dont overwrite\nc7d2f95 Delete unsused files\n20b05d9 Remove more unused files\n2d144f7 Add yamls for new papers\n7882f2d Don't track _site\ncd2b8de Add new papers\n26dc65c Fix author\nbc1962c Interests update\n257eba8 More space for interests\nff6a94a Bib update\n97c4a55 Underline bold\na320806 Other fixes, new paper\n2cb7243 New PDFs\n7321328 PDF update\nf1e3860 Deletions\n7b4d171 Update Bio\n073117a Another update\ncb63517 Another CV Updatee\n192ae7b update headshot\n7fb9365 Update about and contact\n54ef19d CV Update\nb0fb76a Add GR\n6adfab9 n plus one\n8a5509d Needs to be a string\ne2f686e Add Gemfile\nfa098ef properly handle class\na8fffe9 Add cv\n01d029a Add biblib/__pycache__/ to .gitignore\na06e285 Update file paths for personal site and add new PhD experience\ncef1969 ingore\n76398c6 CV Update\n7fe50ca Include asterix\na8ff8fb fix venue name\nc0e24b9 Adds Neurips Paper\n8379341 CV Update\nc2ca090 Typos\n115a23a Re order interests\nb2f98e3 Annual update of interests\n3b6f690 Make thumbnails larger\n177c92f Add note field\n2a49416 Annual update to bio\ne3abd37 Add epj paper\n5ddf58a New papers capitalized\n5b770eb New papers\n199bc67 CV Update\n79d1ef2 Removed consultling line\nb00b8a4 Format\n4ebe937 Consulting\n93cd578 CV, about, and interests update\n218ead3 Third year now!\n8aac2ab snark removed\na404b45 Added new paper\n43117c7 Forgot thumbnail and pdf\n36a7b51 New paper!\nef5ebab Added old research statement for UW\nfbe500f Added old research statement\n883942a Fall 2020 Changes\n6336a21 Added work statement\nec13894 Fixed column layout\n45ad2b8 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\ndd1ae17 Empty commit\n8c236a4 Merge pull request #2 from TheMikeMerrill/jekyll\n018fcf4 Migrated to Jekyll\ndfa4420 Reverted Name (doesn't fit, maybe fix later if bored)\nc61b406 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\nb3ae4f0 Changed name (for real!)\n09cafdd Changed name (for real!)\n719ac48 Added Tim\nedbd5ac Changed name\ndfbe936 Updated CV\nbdbb55c Changed interests\nc13876c Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\n35707d9 Added .nojekyl\n3972ef7 Merge pull request #1 from TheMikeMerrill/deployment\n4798881 Fixed HR Link\nb4ee987 Create CNAME\na1f4a2d Updated Resume\nb2d01e3 Add files via upload\n5f9aeab Add files via upload\na1d746d Delete README.md\n02ed510 Initial commit", "sha": "2ac0cf8ee282"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0009", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git diff master 650dba4\",\"timeout_sec\":300}"}}], "sha": "82c15b4ec0c0"}, {"role": "tool", "tool_call_id": "call_0009", "content": "rc=0\nstdout:\ndiff --git a/_includes/about.md b/_includes/about.md\nindex ebf11b4..7561d9e 100644\n--- a/_includes/about.md\n+++ b/_includes/about.md\n@@ -1,3 +1,3 @@\n-I am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n+I am a Postdoctoral Researcher at Stanford CS.\n \n- Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\n+Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\ndiff --git a/_layouts/default.html b/_layouts/default.html\nindex 3fe07ee..cff5b5e 100644\n--- a/_layouts/default.html\n+++ b/_layouts/default.html\n@@ -27,7 +27,9 @@\n     <link href=\"css/bootstrap.min.css\" rel=\"stylesheet\">\n     <link href=\"css/style.css\" rel=\"stylesheet\">\n \n-    <link href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\" rel=\"stylesheet\">\n+    <link\n+        href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\"\n+        rel=\"stylesheet\">\n \n </head>\n \n@@ -38,7 +40,7 @@\n             <div class=\"jumbotron\">\n                 <div class=\"row\">\n                     <h3>\n-                        PhD Student @ UW CSE\n+                        Postdoc @ Stanford\n                     </h3>\n                 </div>\n                 <div class=\"row\">\n@@ -88,7 +90,7 @@\n         <div class=\"row\">\n             <div class=\"col-md-12\">\n                 <h2>Publications</h2>\n-                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %} \n+                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %}\n                 {% for pub in sorted_pubs %}\n                 <div class=\"row\">\n                     <div class=\"col-md-3 hide-on-small\">\n@@ -99,22 +101,22 @@\n                     <div class=\"col-md-9\">\n                         <p><b>{{pub.title}}</b></p>\n                         <p>\n-                            {% if pub.author contains \"Michael Merrill\" %} \n-                                {% assign a = pub.author | split: 'Michael Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill*\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}} \n+                            {% if pub.author contains \"Michael Merrill\" %}\n+                            {% assign a = pub.author | split: 'Michael Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill*\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}}\n \n                             {% endif %}\n                         </p>\n-                        <p><span class = \"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n+                        <p><span class=\"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n                             <a href=\"{{pub.pdf_path}}\">[PDF]</a> {% endif %}\n                             {% for link in pub.other_links %}\n-                            <a href=\"{{link.url}}\">[{{link.name}}]</a> \n+                            <a href=\"{{link.url}}\">[{{link.name}}]</a>\n                             {% endfor %}\n                             {{pub.notes}}\n                         </p>\n@@ -123,7 +125,7 @@\n                 </div>\n                 {% endfor %}\n             </div>\n-            \n+\n         </div>\n \n     </div>", "sha": "0e17bac08657"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0010", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git cherry-pick 650dba4\",\"timeout_sec\":300}"}}], "sha": "e57d81efb82b"}, {"role": "tool", "tool_call_id": "call_0010", "content": "rc=1\nstdout:\nAuto-merging _includes/about.md\nCONFLICT (content): Merge conflict in _includes/about.md\nstderr:\nerror: could not apply 650dba4... Move to Stanford\nhint: After resolving the conflicts, mark them with\nhint: \"git add/rm <pathspec>\", then run\nhint: \"git cherry-pick --continue\".\nhint: You can instead skip this commit with \"git cherry-pick --skip\".\nhint: To abort and get back to the state before \"git cherry-pick\",\nhint: run \"git cherry-pick --abort\".", "sha": "b462e8c82a68"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0011", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && cat _includes/about.md\",\"timeout_sec\":300}"}}], "sha": "c968a76b171e"}, {"role": "tool", "tool_call_id": "call_0011", "content": "rc=0\nstdout:\n<<<<<<< HEAD\nI am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n\n Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n=======\nI am a Postdoctoral Researcher at Stanford CS.\n\nPreviously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n>>>>>>> 650dba4 (Move to Stanford)", "sha": "56fcaa0e25b0"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. 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Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\n", "finish_reason": "tool_calls", "usage": {"prompt_tokens": 5778, "completion_tokens": 178, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "The conflict is in _includes/about.md. The user wants to keep the changes they made (the \"Move to Stanford\" commit), so I need to resolve the conflict by keeping the incoming changes (the new text about being a Postdoctoral Researcher at Stanford).\n", "response": {"id": "797d789428934f81a17b5306f1450153", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "write", "args": {"path": "/app/personal-site/_includes/about.md", "content": "I am a Postdoctoral Researcher at Stanford CS.\n\nPreviously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n"}}]}, "llm_latency_sec": 0.0019}
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Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0005", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/personal-site/\",\"timeout_sec\":300}"}}], "sha": "bb948e26e723"}, {"role": "tool", "tool_call_id": "call_0005", "content": "rc=0\nstdout:\ntotal 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources", "sha": "1b5ac2427213"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0006", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git status\",\"timeout_sec\":300}"}}], "sha": "15cbf94e37d4"}, {"role": "tool", "tool_call_id": "call_0006", "content": "rc=0\nstdout:\nOn branch master\nnothing to commit, working tree clean", "sha": "ea841e0be3be"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0007", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git reflog\",\"timeout_sec\":300}"}}], "sha": "7dda58606d7e"}, {"role": "tool", "tool_call_id": "call_0007", "content": "rc=0\nstdout:\nd7d3e4b HEAD@{0}: checkout: moving from 650dba427e0a9dcd118f41a4c5e35c8017550a5a to master\n650dba4 HEAD@{1}: commit: Move to Stanford\nc4e38a1 HEAD@{2}: checkout: moving from master to HEAD~1\nd7d3e4b HEAD@{3}: reset: moving to d7d3e4b\nb0d59cd HEAD@{4}: clone: from https://github.com/TheMikeMerrill/personal-site.git", "sha": "3e82d62aaa06"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0008", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git log --oneline master\",\"timeout_sec\":300}"}}], "sha": "01775442ffe4"}, {"role": "tool", "tool_call_id": "call_0008", "content": "rc=0\nstdout:\nd7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib\n2cd355a n+1 (for the last time???)\n8eaf505 Add BLADE\ncc2ec78 Underline\nd71094e Underline Conferences\n232b279 Remove posters\n3fdf5f5 Add NeurIPS\n8c4731d Add EMNLP acceptance\nf54f66b Add GR link\n18d2430 Add other links\n1dd055e Ignore Gemfile, etc\n5c77a6d Dont overwrite\nc7d2f95 Delete unsused files\n20b05d9 Remove more unused files\n2d144f7 Add yamls for new papers\n7882f2d Don't track _site\ncd2b8de Add new papers\n26dc65c Fix author\nbc1962c Interests update\n257eba8 More space for interests\nff6a94a Bib update\n97c4a55 Underline bold\na320806 Other fixes, new paper\n2cb7243 New PDFs\n7321328 PDF update\nf1e3860 Deletions\n7b4d171 Update Bio\n073117a Another update\ncb63517 Another CV Updatee\n192ae7b update headshot\n7fb9365 Update about and contact\n54ef19d CV Update\nb0fb76a Add GR\n6adfab9 n plus one\n8a5509d Needs to be a string\ne2f686e Add Gemfile\nfa098ef properly handle class\na8fffe9 Add cv\n01d029a Add biblib/__pycache__/ to .gitignore\na06e285 Update file paths for personal site and add new PhD experience\ncef1969 ingore\n76398c6 CV Update\n7fe50ca Include asterix\na8ff8fb fix venue name\nc0e24b9 Adds Neurips Paper\n8379341 CV Update\nc2ca090 Typos\n115a23a Re order interests\nb2f98e3 Annual update of interests\n3b6f690 Make thumbnails larger\n177c92f Add note field\n2a49416 Annual update to bio\ne3abd37 Add epj paper\n5ddf58a New papers capitalized\n5b770eb New papers\n199bc67 CV Update\n79d1ef2 Removed consultling line\nb00b8a4 Format\n4ebe937 Consulting\n93cd578 CV, about, and interests update\n218ead3 Third year now!\n8aac2ab snark removed\na404b45 Added new paper\n43117c7 Forgot thumbnail and pdf\n36a7b51 New paper!\nef5ebab Added old research statement for UW\nfbe500f Added old research statement\n883942a Fall 2020 Changes\n6336a21 Added work statement\nec13894 Fixed column layout\n45ad2b8 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\ndd1ae17 Empty commit\n8c236a4 Merge pull request #2 from TheMikeMerrill/jekyll\n018fcf4 Migrated to Jekyll\ndfa4420 Reverted Name (doesn't fit, maybe fix later if bored)\nc61b406 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\nb3ae4f0 Changed name (for real!)\n09cafdd Changed name (for real!)\n719ac48 Added Tim\nedbd5ac Changed name\ndfbe936 Updated CV\nbdbb55c Changed interests\nc13876c Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\n35707d9 Added .nojekyl\n3972ef7 Merge pull request #1 from TheMikeMerrill/deployment\n4798881 Fixed HR Link\nb4ee987 Create CNAME\na1f4a2d Updated Resume\nb2d01e3 Add files via upload\n5f9aeab Add files via upload\na1d746d Delete README.md\n02ed510 Initial commit", "sha": "2ac0cf8ee282"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0009", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git diff master 650dba4\",\"timeout_sec\":300}"}}], "sha": "82c15b4ec0c0"}, {"role": "tool", "tool_call_id": "call_0009", "content": "rc=0\nstdout:\ndiff --git a/_includes/about.md b/_includes/about.md\nindex ebf11b4..7561d9e 100644\n--- a/_includes/about.md\n+++ b/_includes/about.md\n@@ -1,3 +1,3 @@\n-I am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n+I am a Postdoctoral Researcher at Stanford CS.\n \n- Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\n+Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\ndiff --git a/_layouts/default.html b/_layouts/default.html\nindex 3fe07ee..cff5b5e 100644\n--- a/_layouts/default.html\n+++ b/_layouts/default.html\n@@ -27,7 +27,9 @@\n     <link href=\"css/bootstrap.min.css\" rel=\"stylesheet\">\n     <link href=\"css/style.css\" rel=\"stylesheet\">\n \n-    <link href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\" rel=\"stylesheet\">\n+    <link\n+        href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\"\n+        rel=\"stylesheet\">\n \n </head>\n \n@@ -38,7 +40,7 @@\n             <div class=\"jumbotron\">\n                 <div class=\"row\">\n                     <h3>\n-                        PhD Student @ UW CSE\n+                        Postdoc @ Stanford\n                     </h3>\n                 </div>\n                 <div class=\"row\">\n@@ -88,7 +90,7 @@\n         <div class=\"row\">\n             <div class=\"col-md-12\">\n                 <h2>Publications</h2>\n-                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %} \n+                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %}\n                 {% for pub in sorted_pubs %}\n                 <div class=\"row\">\n                     <div class=\"col-md-3 hide-on-small\">\n@@ -99,22 +101,22 @@\n                     <div class=\"col-md-9\">\n                         <p><b>{{pub.title}}</b></p>\n                         <p>\n-                            {% if pub.author contains \"Michael Merrill\" %} \n-                                {% assign a = pub.author | split: 'Michael Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill*\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}} \n+                            {% if pub.author contains \"Michael Merrill\" %}\n+                            {% assign a = pub.author | split: 'Michael Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill*\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}}\n \n                             {% endif %}\n                         </p>\n-                        <p><span class = \"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n+                        <p><span class=\"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n                             <a href=\"{{pub.pdf_path}}\">[PDF]</a> {% endif %}\n                             {% for link in pub.other_links %}\n-                            <a href=\"{{link.url}}\">[{{link.name}}]</a> \n+                            <a href=\"{{link.url}}\">[{{link.name}}]</a>\n                             {% endfor %}\n                             {{pub.notes}}\n                         </p>\n@@ -123,7 +125,7 @@\n                 </div>\n                 {% endfor %}\n             </div>\n-            \n+\n         </div>\n \n     </div>", "sha": "0e17bac08657"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0010", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git cherry-pick 650dba4\",\"timeout_sec\":300}"}}], "sha": "e57d81efb82b"}, {"role": "tool", "tool_call_id": "call_0010", "content": "rc=1\nstdout:\nAuto-merging _includes/about.md\nCONFLICT (content): Merge conflict in _includes/about.md\nstderr:\nerror: could not apply 650dba4... Move to Stanford\nhint: After resolving the conflicts, mark them with\nhint: \"git add/rm <pathspec>\", then run\nhint: \"git cherry-pick --continue\".\nhint: You can instead skip this commit with \"git cherry-pick --skip\".\nhint: To abort and get back to the state before \"git cherry-pick\",\nhint: run \"git cherry-pick --abort\".", "sha": "b462e8c82a68"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0011", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && cat _includes/about.md\",\"timeout_sec\":300}"}}], "sha": "c968a76b171e"}, {"role": "tool", "tool_call_id": "call_0011", "content": "rc=0\nstdout:\n<<<<<<< HEAD\nI am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n\n Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n=======\nI am a Postdoctoral Researcher at Stanford CS.\n\nPreviously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n>>>>>>> 650dba4 (Move to Stanford)", "sha": "56fcaa0e25b0"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0012", "type": "function", "function": {"name": "write", "arguments": "{\"append\":false,\"content\":\"I am a Postdoctoral Researcher at Stanford CS.\\n\\nPreviously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \\n\",\"path\":\"/app/personal-site/_includes/about.md\"}"}}], "sha": "53491fc7afd4"}, {"role": "tool", "tool_call_id": "call_0012", "content": "rc=0\nstdout:\nwrite: wrote 333 bytes to /app/personal-site/_includes/about.md", "sha": "8cd2d34c77a2"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. Defaults to the first 250 lines; page through longer files with offset/limit.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to read; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "offset": {"default": 1, "description": "1-based line number to start reading from.", "minimum": 1, "title": "Offset", "type": "integer"}, "limit": {"default": 250, "description": "Maximum number of lines to return.", "maximum": 2000, "minimum": 1, "title": "Limit", "type": "integer"}}, "required": ["path"], "title": "ReadArgs", "type": "object"}}}, {"type": "function", "function": {"name": "replace", "description": "Persist a code change to disk by replacing text in one file. `old_text` must match the file exactly (whitespace and indentation included) and occur exactly once; the call fails loudly when it is missing or ambiguous -- extend old_text with surrounding lines to disambiguate. To edit several places, return several replace calls.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to edit; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "old_text": {"description": "Exact existing text to replace, whitespace and indentation included; must occur exactly once in the file.", "minLength": 1, "title": "Old Text", "type": "string"}, "new_text": {"description": "Replacement text written in old_text's place.", "title": "New Text", "type": "string"}}, "required": ["path", "old_text", "new_text"], "title": "ReplaceArgs", "type": "object"}}}, {"type": "function", "function": {"name": "run", "description": "Run one shell command.", "parameters": {"additionalProperties": false, "properties": {"command": {"minLength": 1, "title": "Command", "type": "string"}, "cwd": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Cwd"}, "timeout_sec": {"default": 300, "description": "Seconds this command may run before it is terminated and its output so far is returned to you. Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\n", "finish_reason": "tool_calls", "usage": {"prompt_tokens": 5953, "completion_tokens": 364, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "The original file ended with `\\ No newline at end of file`. Let me check if I need to match that exactly. Looking at the original content, it didn't have a trailing newline. But my write added one. Let me check what the actual expected content should be.\n\nLooking at the diff:\n- Original: `I am a sixth PhD candidate...\\n\\n Previously, I was a Student Researcher...HealthRhythms](https://www.healthrhythms.com). \\ No newline at end of file`\n- New: `I am a Postdoctoral Researcher at Stanford CS.\\n\\nPreviously, I was a Student Researcher...HealthRhythms](https://www.healthrhythms.com). \\ No newline at end of file`\n\nThe original about.md didn't have a trailing newline. Let me check the diff again more carefully.\n\nIn the diff:\n- `<<<<<<< HEAD` part: `I am a sixth PhD candidate...\\n\\n Previously, I was a Student Researcher...HealthRhythms](https://www.healthrhythms.com). `\n- `=======` part: `I am a Postdoctoral Researcher at Stanford CS.\\n\\nPreviously, I was a Student Researcher...HealthRhythms](https://www.healthrhythms.com). `\n\nThe new version is the one from commit 650dba4. Let me proceed with adding and continuing the cherry-pick.\n", "response": {"id": "1766407934304ab5ae8a99600487e0f3", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "run", "args": {"command": "cd /app/personal-site && git add _includes/about.md && git cherry-pick --continue --no-edit", "timeout_sec": 300}}]}, "llm_latency_sec": 0.0027}
{"event": "step_completed", "t_sec": 14.5385, "step_index": 13, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 0, "stdout": "[master 98946c1] Move to Stanford\n Date: Sat Sep 13 <TIME> 2025 +0000\n 2 files changed, 19 insertions(+), 17 deletions(-)\n", "stderr": ""}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "completion_received", "t_sec": 14.5542, "step_index": 14, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0005", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/personal-site/\",\"timeout_sec\":300}"}}], "sha": "bb948e26e723"}, {"role": "tool", "tool_call_id": "call_0005", "content": "rc=0\nstdout:\ntotal 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources", "sha": "1b5ac2427213"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0006", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git status\",\"timeout_sec\":300}"}}], "sha": "15cbf94e37d4"}, {"role": "tool", "tool_call_id": "call_0006", "content": "rc=0\nstdout:\nOn branch master\nnothing to commit, working tree clean", "sha": "ea841e0be3be"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0007", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git reflog\",\"timeout_sec\":300}"}}], "sha": "7dda58606d7e"}, {"role": "tool", "tool_call_id": "call_0007", "content": "rc=0\nstdout:\nd7d3e4b HEAD@{0}: checkout: moving from 650dba427e0a9dcd118f41a4c5e35c8017550a5a to master\n650dba4 HEAD@{1}: commit: Move to Stanford\nc4e38a1 HEAD@{2}: checkout: moving from master to HEAD~1\nd7d3e4b HEAD@{3}: reset: moving to d7d3e4b\nb0d59cd HEAD@{4}: clone: from https://github.com/TheMikeMerrill/personal-site.git", "sha": "3e82d62aaa06"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0008", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git log --oneline master\",\"timeout_sec\":300}"}}], "sha": "01775442ffe4"}, {"role": "tool", "tool_call_id": "call_0008", "content": "rc=0\nstdout:\nd7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib\n2cd355a n+1 (for the last time???)\n8eaf505 Add BLADE\ncc2ec78 Underline\nd71094e Underline Conferences\n232b279 Remove posters\n3fdf5f5 Add NeurIPS\n8c4731d Add EMNLP acceptance\nf54f66b Add GR link\n18d2430 Add other links\n1dd055e Ignore Gemfile, etc\n5c77a6d Dont overwrite\nc7d2f95 Delete unsused files\n20b05d9 Remove more unused files\n2d144f7 Add yamls for new papers\n7882f2d Don't track _site\ncd2b8de Add new papers\n26dc65c Fix author\nbc1962c Interests update\n257eba8 More space for interests\nff6a94a Bib update\n97c4a55 Underline bold\na320806 Other fixes, new paper\n2cb7243 New PDFs\n7321328 PDF update\nf1e3860 Deletions\n7b4d171 Update Bio\n073117a Another update\ncb63517 Another CV Updatee\n192ae7b update headshot\n7fb9365 Update about and contact\n54ef19d CV Update\nb0fb76a Add GR\n6adfab9 n plus one\n8a5509d Needs to be a string\ne2f686e Add Gemfile\nfa098ef properly handle class\na8fffe9 Add cv\n01d029a Add biblib/__pycache__/ to .gitignore\na06e285 Update file paths for personal site and add new PhD experience\ncef1969 ingore\n76398c6 CV Update\n7fe50ca Include asterix\na8ff8fb fix venue name\nc0e24b9 Adds Neurips Paper\n8379341 CV Update\nc2ca090 Typos\n115a23a Re order interests\nb2f98e3 Annual update of interests\n3b6f690 Make thumbnails larger\n177c92f Add note field\n2a49416 Annual update to bio\ne3abd37 Add epj paper\n5ddf58a New papers capitalized\n5b770eb New papers\n199bc67 CV Update\n79d1ef2 Removed consultling line\nb00b8a4 Format\n4ebe937 Consulting\n93cd578 CV, about, and interests update\n218ead3 Third year now!\n8aac2ab snark removed\na404b45 Added new paper\n43117c7 Forgot thumbnail and pdf\n36a7b51 New paper!\nef5ebab Added old research statement for UW\nfbe500f Added old research statement\n883942a Fall 2020 Changes\n6336a21 Added work statement\nec13894 Fixed column layout\n45ad2b8 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\ndd1ae17 Empty commit\n8c236a4 Merge pull request #2 from TheMikeMerrill/jekyll\n018fcf4 Migrated to Jekyll\ndfa4420 Reverted Name (doesn't fit, maybe fix later if bored)\nc61b406 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\nb3ae4f0 Changed name (for real!)\n09cafdd Changed name (for real!)\n719ac48 Added Tim\nedbd5ac Changed name\ndfbe936 Updated CV\nbdbb55c Changed interests\nc13876c Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\n35707d9 Added .nojekyl\n3972ef7 Merge pull request #1 from TheMikeMerrill/deployment\n4798881 Fixed HR Link\nb4ee987 Create CNAME\na1f4a2d Updated Resume\nb2d01e3 Add files via upload\n5f9aeab Add files via upload\na1d746d Delete README.md\n02ed510 Initial commit", "sha": "2ac0cf8ee282"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0009", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git diff master 650dba4\",\"timeout_sec\":300}"}}], "sha": "82c15b4ec0c0"}, {"role": "tool", "tool_call_id": "call_0009", "content": "rc=0\nstdout:\ndiff --git a/_includes/about.md b/_includes/about.md\nindex ebf11b4..7561d9e 100644\n--- a/_includes/about.md\n+++ b/_includes/about.md\n@@ -1,3 +1,3 @@\n-I am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n+I am a Postdoctoral Researcher at Stanford CS.\n \n- Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\n+Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\ndiff --git a/_layouts/default.html b/_layouts/default.html\nindex 3fe07ee..cff5b5e 100644\n--- a/_layouts/default.html\n+++ b/_layouts/default.html\n@@ -27,7 +27,9 @@\n     <link href=\"css/bootstrap.min.css\" rel=\"stylesheet\">\n     <link href=\"css/style.css\" rel=\"stylesheet\">\n \n-    <link href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\" rel=\"stylesheet\">\n+    <link\n+        href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\"\n+        rel=\"stylesheet\">\n \n </head>\n \n@@ -38,7 +40,7 @@\n             <div class=\"jumbotron\">\n                 <div class=\"row\">\n                     <h3>\n-                        PhD Student @ UW CSE\n+                        Postdoc @ Stanford\n                     </h3>\n                 </div>\n                 <div class=\"row\">\n@@ -88,7 +90,7 @@\n         <div class=\"row\">\n             <div class=\"col-md-12\">\n                 <h2>Publications</h2>\n-                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %} \n+                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %}\n                 {% for pub in sorted_pubs %}\n                 <div class=\"row\">\n                     <div class=\"col-md-3 hide-on-small\">\n@@ -99,22 +101,22 @@\n                     <div class=\"col-md-9\">\n                         <p><b>{{pub.title}}</b></p>\n                         <p>\n-                            {% if pub.author contains \"Michael Merrill\" %} \n-                                {% assign a = pub.author | split: 'Michael Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill*\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}} \n+                            {% if pub.author contains \"Michael Merrill\" %}\n+                            {% assign a = pub.author | split: 'Michael Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill*\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}}\n \n                             {% endif %}\n                         </p>\n-                        <p><span class = \"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n+                        <p><span class=\"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n                             <a href=\"{{pub.pdf_path}}\">[PDF]</a> {% endif %}\n                             {% for link in pub.other_links %}\n-                            <a href=\"{{link.url}}\">[{{link.name}}]</a> \n+                            <a href=\"{{link.url}}\">[{{link.name}}]</a>\n                             {% endfor %}\n                             {{pub.notes}}\n                         </p>\n@@ -123,7 +125,7 @@\n                 </div>\n                 {% endfor %}\n             </div>\n-            \n+\n         </div>\n \n     </div>", "sha": "0e17bac08657"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0010", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git cherry-pick 650dba4\",\"timeout_sec\":300}"}}], "sha": "e57d81efb82b"}, {"role": "tool", "tool_call_id": "call_0010", "content": "rc=1\nstdout:\nAuto-merging _includes/about.md\nCONFLICT (content): Merge conflict in _includes/about.md\nstderr:\nerror: could not apply 650dba4... Move to Stanford\nhint: After resolving the conflicts, mark them with\nhint: \"git add/rm <pathspec>\", then run\nhint: \"git cherry-pick --continue\".\nhint: You can instead skip this commit with \"git cherry-pick --skip\".\nhint: To abort and get back to the state before \"git cherry-pick\",\nhint: run \"git cherry-pick --abort\".", "sha": "b462e8c82a68"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0011", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && cat _includes/about.md\",\"timeout_sec\":300}"}}], "sha": "c968a76b171e"}, {"role": "tool", "tool_call_id": "call_0011", "content": "rc=0\nstdout:\n<<<<<<< HEAD\nI am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n\n Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n=======\nI am a Postdoctoral Researcher at Stanford CS.\n\nPreviously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n>>>>>>> 650dba4 (Move to Stanford)", "sha": "56fcaa0e25b0"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0012", "type": "function", "function": {"name": "write", "arguments": "{\"append\":false,\"content\":\"I am a Postdoctoral Researcher at Stanford CS.\\n\\nPreviously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \\n\",\"path\":\"/app/personal-site/_includes/about.md\"}"}}], "sha": "53491fc7afd4"}, {"role": "tool", "tool_call_id": "call_0012", "content": "rc=0\nstdout:\nwrite: wrote 333 bytes to /app/personal-site/_includes/about.md", "sha": "8cd2d34c77a2"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0013", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git add _includes/about.md && git cherry-pick --continue --no-edit\",\"timeout_sec\":300}"}}], "sha": "a66894f0198d"}, {"role": "tool", "tool_call_id": "call_0013", "content": "rc=0\nstdout:\n[master 98946c1] Move to Stanford\n Date: Sat Sep 13 <TIME> 2025 +0000\n 2 files changed, 19 insertions(+), 17 deletions(-)", "sha": "e5594b65ed02"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. Defaults to the first 250 lines; page through longer files with offset/limit.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to read; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "offset": {"default": 1, "description": "1-based line number to start reading from.", "minimum": 1, "title": "Offset", "type": "integer"}, "limit": {"default": 250, "description": "Maximum number of lines to return.", "maximum": 2000, "minimum": 1, "title": "Limit", "type": "integer"}}, "required": ["path"], "title": "ReadArgs", "type": "object"}}}, {"type": "function", "function": {"name": "replace", "description": "Persist a code change to disk by replacing text in one file. `old_text` must match the file exactly (whitespace and indentation included) and occur exactly once; the call fails loudly when it is missing or ambiguous -- extend old_text with surrounding lines to disambiguate. To edit several places, return several replace calls.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to edit; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "old_text": {"description": "Exact existing text to replace, whitespace and indentation included; must occur exactly once in the file.", "minLength": 1, "title": "Old Text", "type": "string"}, "new_text": {"description": "Replacement text written in old_text's place.", "title": "New Text", "type": "string"}}, "required": ["path", "old_text", "new_text"], "title": "ReplaceArgs", "type": "object"}}}, {"type": "function", "function": {"name": "run", "description": "Run one shell command.", "parameters": {"additionalProperties": false, "properties": {"command": {"minLength": 1, "title": "Command", "type": "string"}, "cwd": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Cwd"}, "timeout_sec": {"default": 300, "description": "Seconds this command may run before it is terminated and its output so far is returned to you. Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\n", "finish_reason": "tool_calls", "usage": {"prompt_tokens": 6095, "completion_tokens": 94, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "The cherry-pick completed successfully. The commit \"Move to Stanford\" has been applied to master, resolving the merge conflict in _includes/about.md. Let me verify the final state.\n", "response": {"id": "c206f4d6f8ca48d58567caefe9d1a282", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "run", "args": {"command": "cd /app/personal-site && git log --oneline -5", "timeout_sec": 300}}]}, "llm_latency_sec": 0.0014}
{"event": "step_completed", "t_sec": 14.8377, "step_index": 14, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 0, "stdout": "98946c1 Move to Stanford\nd7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib\n", "stderr": ""}, "reward": 0.0, "terminated": false, "truncated": false, "info": {}}, "terminal": false}
{"event": "completion_received", "t_sec": 14.8687, "step_index": 15, "attempt_index": 0, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0005", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/personal-site/\",\"timeout_sec\":300}"}}], "sha": "bb948e26e723"}, {"role": "tool", "tool_call_id": "call_0005", "content": "rc=0\nstdout:\ntotal 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources", "sha": "1b5ac2427213"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0006", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git status\",\"timeout_sec\":300}"}}], "sha": "15cbf94e37d4"}, {"role": "tool", "tool_call_id": "call_0006", "content": "rc=0\nstdout:\nOn branch master\nnothing to commit, working tree clean", "sha": "ea841e0be3be"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0007", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git reflog\",\"timeout_sec\":300}"}}], "sha": "7dda58606d7e"}, {"role": "tool", "tool_call_id": "call_0007", "content": "rc=0\nstdout:\nd7d3e4b HEAD@{0}: checkout: moving from 650dba427e0a9dcd118f41a4c5e35c8017550a5a to master\n650dba4 HEAD@{1}: commit: Move to Stanford\nc4e38a1 HEAD@{2}: checkout: moving from master to HEAD~1\nd7d3e4b HEAD@{3}: reset: moving to d7d3e4b\nb0d59cd HEAD@{4}: clone: from https://github.com/TheMikeMerrill/personal-site.git", "sha": "3e82d62aaa06"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0008", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git log --oneline master\",\"timeout_sec\":300}"}}], "sha": "01775442ffe4"}, {"role": "tool", "tool_call_id": "call_0008", "content": "rc=0\nstdout:\nd7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib\n2cd355a n+1 (for the last time???)\n8eaf505 Add BLADE\ncc2ec78 Underline\nd71094e Underline Conferences\n232b279 Remove posters\n3fdf5f5 Add NeurIPS\n8c4731d Add EMNLP acceptance\nf54f66b Add GR link\n18d2430 Add other links\n1dd055e Ignore Gemfile, etc\n5c77a6d Dont overwrite\nc7d2f95 Delete unsused files\n20b05d9 Remove more unused files\n2d144f7 Add yamls for new papers\n7882f2d Don't track _site\ncd2b8de Add new papers\n26dc65c Fix author\nbc1962c Interests update\n257eba8 More space for interests\nff6a94a Bib update\n97c4a55 Underline bold\na320806 Other fixes, new paper\n2cb7243 New PDFs\n7321328 PDF update\nf1e3860 Deletions\n7b4d171 Update Bio\n073117a Another update\ncb63517 Another CV Updatee\n192ae7b update headshot\n7fb9365 Update about and contact\n54ef19d CV Update\nb0fb76a Add GR\n6adfab9 n plus one\n8a5509d Needs to be a string\ne2f686e Add Gemfile\nfa098ef properly handle class\na8fffe9 Add cv\n01d029a Add biblib/__pycache__/ to .gitignore\na06e285 Update file paths for personal site and add new PhD experience\ncef1969 ingore\n76398c6 CV Update\n7fe50ca Include asterix\na8ff8fb fix venue name\nc0e24b9 Adds Neurips Paper\n8379341 CV Update\nc2ca090 Typos\n115a23a Re order interests\nb2f98e3 Annual update of interests\n3b6f690 Make thumbnails larger\n177c92f Add note field\n2a49416 Annual update to bio\ne3abd37 Add epj paper\n5ddf58a New papers capitalized\n5b770eb New papers\n199bc67 CV Update\n79d1ef2 Removed consultling line\nb00b8a4 Format\n4ebe937 Consulting\n93cd578 CV, about, and interests update\n218ead3 Third year now!\n8aac2ab snark removed\na404b45 Added new paper\n43117c7 Forgot thumbnail and pdf\n36a7b51 New paper!\nef5ebab Added old research statement for UW\nfbe500f Added old research statement\n883942a Fall 2020 Changes\n6336a21 Added work statement\nec13894 Fixed column layout\n45ad2b8 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\ndd1ae17 Empty commit\n8c236a4 Merge pull request #2 from TheMikeMerrill/jekyll\n018fcf4 Migrated to Jekyll\ndfa4420 Reverted Name (doesn't fit, maybe fix later if bored)\nc61b406 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\nb3ae4f0 Changed name (for real!)\n09cafdd Changed name (for real!)\n719ac48 Added Tim\nedbd5ac Changed name\ndfbe936 Updated CV\nbdbb55c Changed interests\nc13876c Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\n35707d9 Added .nojekyl\n3972ef7 Merge pull request #1 from TheMikeMerrill/deployment\n4798881 Fixed HR Link\nb4ee987 Create CNAME\na1f4a2d Updated Resume\nb2d01e3 Add files via upload\n5f9aeab Add files via upload\na1d746d Delete README.md\n02ed510 Initial commit", "sha": "2ac0cf8ee282"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0009", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git diff master 650dba4\",\"timeout_sec\":300}"}}], "sha": "82c15b4ec0c0"}, {"role": "tool", "tool_call_id": "call_0009", "content": "rc=0\nstdout:\ndiff --git a/_includes/about.md b/_includes/about.md\nindex ebf11b4..7561d9e 100644\n--- a/_includes/about.md\n+++ b/_includes/about.md\n@@ -1,3 +1,3 @@\n-I am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n+I am a Postdoctoral Researcher at Stanford CS.\n \n- Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\n+Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\ndiff --git a/_layouts/default.html b/_layouts/default.html\nindex 3fe07ee..cff5b5e 100644\n--- a/_layouts/default.html\n+++ b/_layouts/default.html\n@@ -27,7 +27,9 @@\n     <link href=\"css/bootstrap.min.css\" rel=\"stylesheet\">\n     <link href=\"css/style.css\" rel=\"stylesheet\">\n \n-    <link href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\" rel=\"stylesheet\">\n+    <link\n+        href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\"\n+        rel=\"stylesheet\">\n \n </head>\n \n@@ -38,7 +40,7 @@\n             <div class=\"jumbotron\">\n                 <div class=\"row\">\n                     <h3>\n-                        PhD Student @ UW CSE\n+                        Postdoc @ Stanford\n                     </h3>\n                 </div>\n                 <div class=\"row\">\n@@ -88,7 +90,7 @@\n         <div class=\"row\">\n             <div class=\"col-md-12\">\n                 <h2>Publications</h2>\n-                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %} \n+                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %}\n                 {% for pub in sorted_pubs %}\n                 <div class=\"row\">\n                     <div class=\"col-md-3 hide-on-small\">\n@@ -99,22 +101,22 @@\n                     <div class=\"col-md-9\">\n                         <p><b>{{pub.title}}</b></p>\n                         <p>\n-                            {% if pub.author contains \"Michael Merrill\" %} \n-                                {% assign a = pub.author | split: 'Michael Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill*\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}} \n+                            {% if pub.author contains \"Michael Merrill\" %}\n+                            {% assign a = pub.author | split: 'Michael Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill*\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}}\n \n                             {% endif %}\n                         </p>\n-                        <p><span class = \"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n+                        <p><span class=\"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n                             <a href=\"{{pub.pdf_path}}\">[PDF]</a> {% endif %}\n                             {% for link in pub.other_links %}\n-                            <a href=\"{{link.url}}\">[{{link.name}}]</a> \n+                            <a href=\"{{link.url}}\">[{{link.name}}]</a>\n                             {% endfor %}\n                             {{pub.notes}}\n                         </p>\n@@ -123,7 +125,7 @@\n                 </div>\n                 {% endfor %}\n             </div>\n-            \n+\n         </div>\n \n     </div>", "sha": "0e17bac08657"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0010", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git cherry-pick 650dba4\",\"timeout_sec\":300}"}}], "sha": "e57d81efb82b"}, {"role": "tool", "tool_call_id": "call_0010", "content": "rc=1\nstdout:\nAuto-merging _includes/about.md\nCONFLICT (content): Merge conflict in _includes/about.md\nstderr:\nerror: could not apply 650dba4... Move to Stanford\nhint: After resolving the conflicts, mark them with\nhint: \"git add/rm <pathspec>\", then run\nhint: \"git cherry-pick --continue\".\nhint: You can instead skip this commit with \"git cherry-pick --skip\".\nhint: To abort and get back to the state before \"git cherry-pick\",\nhint: run \"git cherry-pick --abort\".", "sha": "b462e8c82a68"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0011", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && cat _includes/about.md\",\"timeout_sec\":300}"}}], "sha": "c968a76b171e"}, {"role": "tool", "tool_call_id": "call_0011", "content": "rc=0\nstdout:\n<<<<<<< HEAD\nI am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n\n Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n=======\nI am a Postdoctoral Researcher at Stanford CS.\n\nPreviously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n>>>>>>> 650dba4 (Move to Stanford)", "sha": "56fcaa0e25b0"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0012", "type": "function", "function": {"name": "write", "arguments": "{\"append\":false,\"content\":\"I am a Postdoctoral Researcher at Stanford CS.\\n\\nPreviously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \\n\",\"path\":\"/app/personal-site/_includes/about.md\"}"}}], "sha": "53491fc7afd4"}, {"role": "tool", "tool_call_id": "call_0012", "content": "rc=0\nstdout:\nwrite: wrote 333 bytes to /app/personal-site/_includes/about.md", "sha": "8cd2d34c77a2"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0013", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git add _includes/about.md && git cherry-pick --continue --no-edit\",\"timeout_sec\":300}"}}], "sha": "a66894f0198d"}, {"role": "tool", "tool_call_id": "call_0013", "content": "rc=0\nstdout:\n[master 98946c1] Move to Stanford\n Date: Sat Sep 13 <TIME> 2025 +0000\n 2 files changed, 19 insertions(+), 17 deletions(-)", "sha": "e5594b65ed02"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0014", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git log --oneline -5\",\"timeout_sec\":300}"}}], "sha": "f67da327aca5"}, {"role": "tool", "tool_call_id": "call_0014", "content": "rc=0\nstdout:\n98946c1 Move to Stanford\nd7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib", "sha": "f1beac9adcbe"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. Defaults to the first 250 lines; page through longer files with offset/limit.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to read; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "offset": {"default": 1, "description": "1-based line number to start reading from.", "minimum": 1, "title": "Offset", "type": "integer"}, "limit": {"default": 250, "description": "Maximum number of lines to return.", "maximum": 2000, "minimum": 1, "title": "Limit", "type": "integer"}}, "required": ["path"], "title": "ReadArgs", "type": "object"}}}, {"type": "function", "function": {"name": "replace", "description": "Persist a code change to disk by replacing text in one file. `old_text` must match the file exactly (whitespace and indentation included) and occur exactly once; the call fails loudly when it is missing or ambiguous -- extend old_text with surrounding lines to disambiguate. To edit several places, return several replace calls.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to edit; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "old_text": {"description": "Exact existing text to replace, whitespace and indentation included; must occur exactly once in the file.", "minLength": 1, "title": "Old Text", "type": "string"}, "new_text": {"description": "Replacement text written in old_text's place.", "title": "New Text", "type": "string"}}, "required": ["path", "old_text", "new_text"], "title": "ReplaceArgs", "type": "object"}}}, {"type": "function", "function": {"name": "run", "description": "Run one shell command.", "parameters": {"additionalProperties": false, "properties": {"command": {"minLength": 1, "title": "Command", "type": "string"}, "cwd": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Cwd"}, "timeout_sec": {"default": 300, "description": "Seconds this command may run before it is terminated and its output so far is returned to you. Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\nThe lost changes have been found and merged into master. Here's what happened:\n\n1. **Found the lost commit**: Using `git reflog`, I discovered that you had checked out a detached HEAD commit (`650dba4`) which contained the \"Move to Stanford\" changes, then switched back to master \u2014 which dropped those changes.\n\n2. **Applied the changes**: I used `git cherry-pick 650dba4` to replay that commit onto master.\n\n3. **Resolved a conflict**: There was a merge conflict in `_includes/about.md` (the old master had the UW version while the lost commit had the Stanford version). I resolved it by keeping the Stanford version (the intended change).\n\nThe commit \"Move to Stanford\" is now applied on master with 2 files changed:\n- `_includes/about.md` \u2014 updated to \"I am a Postdoctoral Researcher at Stanford CS\"\n- `_layouts/default.html` \u2014 updated header to \"Postdoc @ Stanford\" and some whitespace cleanup", "finish_reason": "stop", "usage": {"prompt_tokens": 6231, "completion_tokens": 283, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "The cherry-pick of commit 650dba4 (\"Move to Stanford\") has been successfully applied to master. The changes that were made to the personal site (updating the about page to reflect moving to Stanford, and some formatting changes to the default layout) are now merged into master. Let me verify the changes are in place.\n", "response": {"id": "5cd7352a0dd44d6e9a4a15e82781c318", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": []}, "llm_latency_sec": 0.0011}
{"event": "action_parse_failed", "t_sec": 14.8765, "step_index": 15, "error": "MissingToolCall", "detail": "model response omitted required tool call"}
{"event": "completion_received", "t_sec": 14.8888, "step_index": 15, "attempt_index": 1, "request_messages": [{"role": "system", "content": "You are controlling a coding environment.\nUse run to execute shell commands in the environment.\nUse read to view file contents.\nrun output is scratch: editing a file inside a `python` snippet or a here-doc that only prints does NOT persist your fix.\nEach run command is terminated after its timeout_sec (default 300s) and returns the output captured so far; raise timeout_sec for known-slow builds or tests, and if a command times out, change your approach rather than rerunning it unchanged.\nObservation text may mask volatile tokens as <TIME>, <PID>, <BINARY_STDOUT>, and similar placeholders; treat them as harness redactions of unstable runtime data.\nTo change a file on disk, call write (create or overwrite a whole file; use append=true on later write calls to split long files) or replace (one exact old_text edit in an existing file); the on-disk state at submit is the only thing graded.\nReturn one or more tool calls. They execute in order with no intermediate observation, then the resulting observation appears in the next turn.\nCall submit when the solution is ready for the authoritative task judgment; submit ends the trial.", "sha": "6a1773d17818"}, {"role": "user", "content": "Task instruction:\n\nI just made some changes to my personal site and checked out master, but now I can't find those changes. Please help me find them and merge them into master.\n\n\nworking_dir: /app", "sha": "176c248cc5d3"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0001", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git status\",\"timeout_sec\":300}"}}], "sha": "d0c304f0be90"}, {"role": "tool", "tool_call_id": "call_0001", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "acf909849327"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0002", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git log --oneline -10\",\"timeout_sec\":300}"}}], "sha": "cfcd106701af"}, {"role": "tool", "tool_call_id": "call_0002", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "40efb9441054"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0003", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app && git branch -a\",\"timeout_sec\":300}"}}], "sha": "eb79cd105e5d"}, {"role": "tool", "tool_call_id": "call_0003", "content": "rc=128\nstderr:\nfatal: not a git repository (or any of the parent directories): .git", "sha": "38f35e1c42bb"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0004", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/\",\"timeout_sec\":300}"}}], "sha": "cfe18d5eb180"}, {"role": "tool", "tool_call_id": "call_0004", "content": "rc=0\nstdout:\ntotal 4\ndrwxr-xr-x 1 root root  26 <MTIME> .\ndrwxr-xr-x 1 root root  32 <MTIME> ..\ndrwxr-xr-x 1 root root 252 <MTIME> personal-site\ndrwxr-xr-x 1 root root  22 <MTIME> resources\n-rw-r--r-- 1 root root 504 <MTIME> setup.sh", "sha": "3c308741bf86"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0005", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"ls -la /app/personal-site/\",\"timeout_sec\":300}"}}], "sha": "bb948e26e723"}, {"role": "tool", "tool_call_id": "call_0005", "content": "rc=0\nstdout:\ntotal 44\ndrwxr-xr-x 1 root root   252 <MTIME> .\ndrwxr-xr-x 1 root root    26 <MTIME> ..\ndrwxr-xr-x 1 root root   184 <MTIME> .git\n-rw-r--r-- 1 root root   100 <MTIME> .gitignore\n-rw-r--r-- 1 root root    14 <MTIME> CNAME\n-rw-r--r-- 1 root root    42 <MTIME> Gemfile\n-rw-r--r-- 1 root root   152 <MTIME> _config.yml\ndrwxr-xr-x 1 root root    60 <MTIME> _includes\ndrwxr-xr-x 1 root root    24 <MTIME> _layouts\ndrwxr-xr-x 1 root root    76 <MTIME> _posters\ndrwxr-xr-x 1 root root   650 <MTIME> _publications\ndrwxr-xr-x 1 root root    84 <MTIME> biblib\ndrwxr-xr-x 1 root root   522 <MTIME> css\ndrwxr-xr-x 1 root root   416 <MTIME> fonts\n-rw-r--r-- 1 root root    47 <MTIME> index.md\ndrwxr-xr-x 1 root root   104 <MTIME> js\n-rw-r--r-- 1 root root  2382 <MTIME> make_pubs.py\n-rw-r--r-- 1 root root 19618 <MTIME> me.bib\ndrwxr-xr-x 1 root root   296 <MTIME> resources", "sha": "1b5ac2427213"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0006", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git status\",\"timeout_sec\":300}"}}], "sha": "15cbf94e37d4"}, {"role": "tool", "tool_call_id": "call_0006", "content": "rc=0\nstdout:\nOn branch master\nnothing to commit, working tree clean", "sha": "ea841e0be3be"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0007", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git reflog\",\"timeout_sec\":300}"}}], "sha": "7dda58606d7e"}, {"role": "tool", "tool_call_id": "call_0007", "content": "rc=0\nstdout:\nd7d3e4b HEAD@{0}: checkout: moving from 650dba427e0a9dcd118f41a4c5e35c8017550a5a to master\n650dba4 HEAD@{1}: commit: Move to Stanford\nc4e38a1 HEAD@{2}: checkout: moving from master to HEAD~1\nd7d3e4b HEAD@{3}: reset: moving to d7d3e4b\nb0d59cd HEAD@{4}: clone: from https://github.com/TheMikeMerrill/personal-site.git", "sha": "3e82d62aaa06"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0008", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git log --oneline master\",\"timeout_sec\":300}"}}], "sha": "01775442ffe4"}, {"role": "tool", "tool_call_id": "call_0008", "content": "rc=0\nstdout:\nd7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib\n2cd355a n+1 (for the last time???)\n8eaf505 Add BLADE\ncc2ec78 Underline\nd71094e Underline Conferences\n232b279 Remove posters\n3fdf5f5 Add NeurIPS\n8c4731d Add EMNLP acceptance\nf54f66b Add GR link\n18d2430 Add other links\n1dd055e Ignore Gemfile, etc\n5c77a6d Dont overwrite\nc7d2f95 Delete unsused files\n20b05d9 Remove more unused files\n2d144f7 Add yamls for new papers\n7882f2d Don't track _site\ncd2b8de Add new papers\n26dc65c Fix author\nbc1962c Interests update\n257eba8 More space for interests\nff6a94a Bib update\n97c4a55 Underline bold\na320806 Other fixes, new paper\n2cb7243 New PDFs\n7321328 PDF update\nf1e3860 Deletions\n7b4d171 Update Bio\n073117a Another update\ncb63517 Another CV Updatee\n192ae7b update headshot\n7fb9365 Update about and contact\n54ef19d CV Update\nb0fb76a Add GR\n6adfab9 n plus one\n8a5509d Needs to be a string\ne2f686e Add Gemfile\nfa098ef properly handle class\na8fffe9 Add cv\n01d029a Add biblib/__pycache__/ to .gitignore\na06e285 Update file paths for personal site and add new PhD experience\ncef1969 ingore\n76398c6 CV Update\n7fe50ca Include asterix\na8ff8fb fix venue name\nc0e24b9 Adds Neurips Paper\n8379341 CV Update\nc2ca090 Typos\n115a23a Re order interests\nb2f98e3 Annual update of interests\n3b6f690 Make thumbnails larger\n177c92f Add note field\n2a49416 Annual update to bio\ne3abd37 Add epj paper\n5ddf58a New papers capitalized\n5b770eb New papers\n199bc67 CV Update\n79d1ef2 Removed consultling line\nb00b8a4 Format\n4ebe937 Consulting\n93cd578 CV, about, and interests update\n218ead3 Third year now!\n8aac2ab snark removed\na404b45 Added new paper\n43117c7 Forgot thumbnail and pdf\n36a7b51 New paper!\nef5ebab Added old research statement for UW\nfbe500f Added old research statement\n883942a Fall 2020 Changes\n6336a21 Added work statement\nec13894 Fixed column layout\n45ad2b8 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\ndd1ae17 Empty commit\n8c236a4 Merge pull request #2 from TheMikeMerrill/jekyll\n018fcf4 Migrated to Jekyll\ndfa4420 Reverted Name (doesn't fit, maybe fix later if bored)\nc61b406 Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\nb3ae4f0 Changed name (for real!)\n09cafdd Changed name (for real!)\n719ac48 Added Tim\nedbd5ac Changed name\ndfbe936 Updated CV\nbdbb55c Changed interests\nc13876c Merge branch 'master' of https://github.com/TheMikeMerrill/personal-site\n35707d9 Added .nojekyl\n3972ef7 Merge pull request #1 from TheMikeMerrill/deployment\n4798881 Fixed HR Link\nb4ee987 Create CNAME\na1f4a2d Updated Resume\nb2d01e3 Add files via upload\n5f9aeab Add files via upload\na1d746d Delete README.md\n02ed510 Initial commit", "sha": "2ac0cf8ee282"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0009", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git diff master 650dba4\",\"timeout_sec\":300}"}}], "sha": "82c15b4ec0c0"}, {"role": "tool", "tool_call_id": "call_0009", "content": "rc=0\nstdout:\ndiff --git a/_includes/about.md b/_includes/about.md\nindex ebf11b4..7561d9e 100644\n--- a/_includes/about.md\n+++ b/_includes/about.md\n@@ -1,3 +1,3 @@\n-I am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n+I am a Postdoctoral Researcher at Stanford CS.\n \n- Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\n+Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n\\ No newline at end of file\ndiff --git a/_layouts/default.html b/_layouts/default.html\nindex 3fe07ee..cff5b5e 100644\n--- a/_layouts/default.html\n+++ b/_layouts/default.html\n@@ -27,7 +27,9 @@\n     <link href=\"css/bootstrap.min.css\" rel=\"stylesheet\">\n     <link href=\"css/style.css\" rel=\"stylesheet\">\n \n-    <link href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\" rel=\"stylesheet\">\n+    <link\n+        href=\"https://fonts.googleapis.com/css?family=Noto+Sans+HK:100,300|Barlow+Condensed|PT+Mono|PT+Serif&display=swap\"\n+        rel=\"stylesheet\">\n \n </head>\n \n@@ -38,7 +40,7 @@\n             <div class=\"jumbotron\">\n                 <div class=\"row\">\n                     <h3>\n-                        PhD Student @ UW CSE\n+                        Postdoc @ Stanford\n                     </h3>\n                 </div>\n                 <div class=\"row\">\n@@ -88,7 +90,7 @@\n         <div class=\"row\">\n             <div class=\"col-md-12\">\n                 <h2>Publications</h2>\n-                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %} \n+                {% assign sorted_pubs = site.publications | sort: 'year' | reverse %}\n                 {% for pub in sorted_pubs %}\n                 <div class=\"row\">\n                     <div class=\"col-md-3 hide-on-small\">\n@@ -99,22 +101,22 @@\n                     <div class=\"col-md-9\">\n                         <p><b>{{pub.title}}</b></p>\n                         <p>\n-                            {% if pub.author contains \"Michael Merrill\" %} \n-                                {% assign a = pub.author | split: 'Michael Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill*\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}} \n-                            {% elsif pub.author contains \"Mike A. Merrill\" %} \n-                                {% assign a = pub.author | split: 'Mike A. Merrill' %} \n-                                {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}} \n+                            {% if pub.author contains \"Michael Merrill\" %}\n+                            {% assign a = pub.author | split: 'Michael Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Michael Merrill</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill*\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill*</span>{{a[1]}}\n+                            {% elsif pub.author contains \"Mike A. Merrill\" %}\n+                            {% assign a = pub.author | split: 'Mike A. Merrill' %}\n+                            {{a[0]}}<span class=\"author\">Mike A. Merrill</span>{{a[1]}}\n \n                             {% endif %}\n                         </p>\n-                        <p><span class = \"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n+                        <p><span class=\"venue\">{{pub.venue}}</span>, {{pub.year}} {% if pub.pdf_path %}\n                             <a href=\"{{pub.pdf_path}}\">[PDF]</a> {% endif %}\n                             {% for link in pub.other_links %}\n-                            <a href=\"{{link.url}}\">[{{link.name}}]</a> \n+                            <a href=\"{{link.url}}\">[{{link.name}}]</a>\n                             {% endfor %}\n                             {{pub.notes}}\n                         </p>\n@@ -123,7 +125,7 @@\n                 </div>\n                 {% endfor %}\n             </div>\n-            \n+\n         </div>\n \n     </div>", "sha": "0e17bac08657"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0010", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git cherry-pick 650dba4\",\"timeout_sec\":300}"}}], "sha": "e57d81efb82b"}, {"role": "tool", "tool_call_id": "call_0010", "content": "rc=1\nstdout:\nAuto-merging _includes/about.md\nCONFLICT (content): Merge conflict in _includes/about.md\nstderr:\nerror: could not apply 650dba4... Move to Stanford\nhint: After resolving the conflicts, mark them with\nhint: \"git add/rm <pathspec>\", then run\nhint: \"git cherry-pick --continue\".\nhint: You can instead skip this commit with \"git cherry-pick --skip\".\nhint: To abort and get back to the state before \"git cherry-pick\",\nhint: run \"git cherry-pick --abort\".", "sha": "b462e8c82a68"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0011", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && cat _includes/about.md\",\"timeout_sec\":300}"}}], "sha": "c968a76b171e"}, {"role": "tool", "tool_call_id": "call_0011", "content": "rc=0\nstdout:\n<<<<<<< HEAD\nI am a sixth PhD candidate at the [Paul G. Allen School of Computer Science & Engineering](https://www.cs.washington.edu/) at The University of Washington, where I am advised by [Tim Althoff](http://www.timalthoff.com/). I am affiliated with [UW NLP](https://twitter.com/uwnlp).\n\n Previously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n=======\nI am a Postdoctoral Researcher at Stanford CS.\n\nPreviously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \n>>>>>>> 650dba4 (Move to Stanford)", "sha": "56fcaa0e25b0"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0012", "type": "function", "function": {"name": "write", "arguments": "{\"append\":false,\"content\":\"I am a Postdoctoral Researcher at Stanford CS.\\n\\nPreviously, I was a Student Researcher at [Google Research](https://research.google/), an ML Research Intern at [Apple Health AI](https://machinelearning.apple.com/work-with-us) and a data scientist and the second full-time employee at [HealthRhythms](https://www.healthrhythms.com). \\n\",\"path\":\"/app/personal-site/_includes/about.md\"}"}}], "sha": "53491fc7afd4"}, {"role": "tool", "tool_call_id": "call_0012", "content": "rc=0\nstdout:\nwrite: wrote 333 bytes to /app/personal-site/_includes/about.md", "sha": "8cd2d34c77a2"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0013", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git add _includes/about.md && git cherry-pick --continue --no-edit\",\"timeout_sec\":300}"}}], "sha": "a66894f0198d"}, {"role": "tool", "tool_call_id": "call_0013", "content": "rc=0\nstdout:\n[master 98946c1] Move to Stanford\n Date: Sat Sep 13 <TIME> 2025 +0000\n 2 files changed, 19 insertions(+), 17 deletions(-)", "sha": "e5594b65ed02"}, {"role": "assistant", "content": null, "tool_calls": [{"id": "call_0014", "type": "function", "function": {"name": "run", "arguments": "{\"command\":\"cd /app/personal-site && git log --oneline -5\",\"timeout_sec\":300}"}}], "sha": "f67da327aca5"}, {"role": "tool", "tool_call_id": "call_0014", "content": "rc=0\nstdout:\n98946c1 Move to Stanford\nd7d3e4b off the job market woo\nc4e38a1 Add code link for BLADE\n6f46fa0 CV Update\ndd7e395 Adds BLADE to bib", "sha": "f1beac9adcbe"}, {"role": "assistant", "content": "\n\nThe lost changes have been found and merged into master. Here's what happened:\n\n1. **Found the lost commit**: Using `git reflog`, I discovered that you had checked out a detached HEAD commit (`650dba4`) which contained the \"Move to Stanford\" changes, then switched back to master \u2014 which dropped those changes.\n\n2. **Applied the changes**: I used `git cherry-pick 650dba4` to replay that commit onto master.\n\n3. **Resolved a conflict**: There was a merge conflict in `_includes/about.md` (the old master had the UW version while the lost commit had the Stanford version). I resolved it by keeping the Stanford version (the intended change).\n\nThe commit \"Move to Stanford\" is now applied on master with 2 files changed:\n- `_includes/about.md` \u2014 updated to \"I am a Postdoctoral Researcher at Stanford CS\"\n- `_layouts/default.html` \u2014 updated header to \"Postdoc @ Stanford\" and some whitespace cleanup", "sha": "5c6a907da320"}, {"role": "user", "content": "Your previous response omitted the required tool call. Return one or more tool calls and no natural language.", "sha": "a9621800a4e8"}], "request_tools": {"tools": [{"type": "function", "function": {"name": "read", "description": "Read a window of one file as plain text. Defaults to the first 250 lines; page through longer files with offset/limit.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to read; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "offset": {"default": 1, "description": "1-based line number to start reading from.", "minimum": 1, "title": "Offset", "type": "integer"}, "limit": {"default": 250, "description": "Maximum number of lines to return.", "maximum": 2000, "minimum": 1, "title": "Limit", "type": "integer"}}, "required": ["path"], "title": "ReadArgs", "type": "object"}}}, {"type": "function", "function": {"name": "replace", "description": "Persist a code change to disk by replacing text in one file. `old_text` must match the file exactly (whitespace and indentation included) and occur exactly once; the call fails loudly when it is missing or ambiguous -- extend old_text with surrounding lines to disambiguate. To edit several places, return several replace calls.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to edit; relative paths resolve against the task working directory.", "minLength": 1, "title": "Path", "type": "string"}, "old_text": {"description": "Exact existing text to replace, whitespace and indentation included; must occur exactly once in the file.", "minLength": 1, "title": "Old Text", "type": "string"}, "new_text": {"description": "Replacement text written in old_text's place.", "title": "New Text", "type": "string"}}, "required": ["path", "old_text", "new_text"], "title": "ReplaceArgs", "type": "object"}}}, {"type": "function", "function": {"name": "run", "description": "Run one shell command.", "parameters": {"additionalProperties": false, "properties": {"command": {"minLength": 1, "title": "Command", "type": "string"}, "cwd": {"anyOf": [{"type": "string"}, {"type": "null"}], "default": null, "title": "Cwd"}, "timeout_sec": {"default": 300, "description": "Seconds this command may run before it is terminated and its output so far is returned to you. Omit to use the 300s default; raise it for known-slow builds or tests.", "minimum": 1, "title": "Timeout Sec", "type": "integer"}}, "required": ["command"], "title": "RunArgs", "type": "object"}}}, {"type": "function", "function": {"name": "submit", "description": "Submit the current solution for grading.", "parameters": {"additionalProperties": false, "properties": {}, "title": "SubmitArgs", "type": "object"}}}, {"type": "function", "function": {"name": "write", "description": "Create or overwrite one file on disk with the given content (parent directories are created). For a small targeted edit to an existing file, prefer replace.", "parameters": {"additionalProperties": false, "properties": {"path": {"description": "File to create or overwrite; relative paths resolve against the task working directory. Parent directories are created.", "minLength": 1, "title": "Path", "type": "string"}, "content": {"description": "Full file content, written to disk exactly as given.", "title": "Content", "type": "string"}, "append": {"default": false, "description": "Append this content to the file instead of overwriting it; use a first write with append=false and later writes with append=true for long files.", "title": "Append", "type": "boolean"}}, "required": ["path", "content"], "title": "WriteArgs", "type": "object"}}}], "sha": "3c8ffdad70b1"}, "completion": {"content": "\n\n", "finish_reason": "tool_calls", "usage": {"prompt_tokens": 6416, "completion_tokens": 64, "reasoning_tokens": null, "cached_input_tokens": null}, "reasoning_content": "The task is complete. The lost changes from commit 650dba4 (\"Move to Stanford\") have been successfully cherry-picked onto master after resolving a merge conflict in _includes/about.md. I should submit the solution now.\n", "response": {"id": "71ee70fe6f084f328cef649623301cbd", "model": "Qwen/Qwen3.6-35B-A3B", "system_fingerprint": null}, "calls": [{"call_index": 0, "name": "submit", "args": {}}]}, "llm_latency_sec": 0.0013}
{"event": "step_completed", "t_sec": 18.5428, "step_index": 15, "call_index": 0, "step_result": {"raw_env_output": {"instruction": "", "working_dir": null, "exit_code": 0, "stdout": "Downloading pygments (1.2MiB)\n Downloading pygments\nInstalled 6 packages in <DUR>\n======== test session starts ========\nplatform linux -- Python 3.13.7, pytest-8.4.1, pluggy-1.6.0\nrootdir: /tests\nplugins: json-ctrf-0.3.5\ncollected 2 items\n\n../tests/test_outputs.py ..                                              [100%]\n\n======== PASSES ========\n======== short test summary info ========\nPASSED ../tests/test_outputs.py::test_about_file\nPASSED ../tests/test_outputs.py::test_layout_file\n======== 2 passed in <DUR> ========\n", "stderr": ""}, "reward": 1.0, "terminated": true, "truncated": false, "info": {"completed": true, "passed": true, "rewards": {"reward": 1.0}, "task_name": "terminal-bench/fix-git", "verifier_exit_code": 0}}, "terminal": true}